Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0121 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGCTCGTGGGTTTCTGAGATTCGTCACCCATTATTGAAGAGAAGGGTGTGGCTTGGGACATTTGGAACAGCTGAAGAAGCAGCTAGAGCATATGATGAGGCAGCCATTTTGATGAGTGGCAGAAACGCCAAAACAAACTTCCCAGTTGCGGATAATCAAATGGGCAATCAGAGTTCTACTTCATACTCTTCCAGTTCCACAACATTTTCTTCAGTTCTCAATGCAAAGCTCAGGAAGTGCTGCAAGTCCCCTTCACCTTCCCTCACTTGCCTAAGGCTTGACACTGAGAATTCCCACTTCGGGGTGTGGCAGAAGCGAGCATGGCCTCGTTCTGAATCAAACTGGATTATGACAGTTGAGTTGGAACGGAAGAATGTTAATCTTGGAGTTTCTGATTCAGAAGTGTCAGTGCCAGAGAAGGTTGAAGTTAAAGCAGATGAAAGCAACAATGGGTTGGGTGAGGAGCAGAAGATTGCGTTGCAGATGATAGAAGAGCTTCTGAATAGGAATTGA 558 0.4606 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFGTAEEAARAYDEAAILMSGRNAKTNFPVADNQMGNQSSTSYSSSSTTFSSVLNAKLRKCCKSPSPSLTCLRLDTENSHFGVWQKRAWPRSESNWIMTVELERKNVNLGVSDSEVSVPEKVEVKADESNNGLGEEQKIALQMIEELLNRN 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0121 185 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Ssu8g0121 185 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Ssu8g0121 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WIN1-LIKE 1 185 - -
Ssu8g0121 185 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Ssu8g0121 185 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Ssu8g0121 185 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Ssu8g0121 185 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 185 - -
Ssu8g0121 185 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Ssu8g0121 185 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Ssu8g0121 185 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0121 Ssu-Chr8 1940136 1940925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0121 1 185 AP2-EREBP Transcription Factor Family AT1G15360 62.000 1.77e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu8g0121 AP2 7.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0121 - - gmx:100778381 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0121 8 1940136 1940925 Ssu8g0121 8 1940136 1940925 ECH