Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0120 ATGGCGCAAATTCTGCTGCATGGGACCCTCCATGCCACAATCTATGAGGTGGATAAGCTCAAGGCTGGAACTAGTGGTAATATTTTAACCAAGCTGGTACAAAACATCGAGGAGAAAATTGGTATTGGGAAAGGCGTTCCTAAACTATATGCAACCATTGATCTAGAGAAGGCACGCGTGGGAAGAACCAGAATTATAGAAAAGGAGCACACAAATCCAAAATGGTACGAGTCTTTTCACATTTATTGTGCTCACATGGCATCACATATCATATTCACCGTGAAAGATGATAATCCTATTGGTGCAACATTAATTGGAAGAGCATACGTGCCTGTTGAGGATGTGTTGGACGGCAAAGAAATAGACAGATGGGTCGAAATACTGGATGAGCATAAAAAACCAATACATTCACATTCCAAGATCCACGTGAAGCTGCAATACTTCGATGTTTCAAAAGACCGCAACTGGGGCCAAGGCATTAGAAGTCCTAAGTTCCCTGGAGTTCCTTACACTTTCTTCTCACAAAGACAAGGATGTAAGGTTTCTCTGTACCAAGATGCTCATGTCCCAGACAACTTTGTCCCTAAAATACCACTTGCTGGAGGCCACACTTACCAGCCTCATAGATGTTGGGAAGATGTTTTCGACGCAATCAATAACGCTCAACACTTGATATACATTACAGGATGGTCTGTTTACACTGAGATTACGTTGGTAAGGGATTCTAGGAGACCAAAGCCTGGAGGAGATGCAACACTTGGTGAGCTTCTCAAGAAAAAAGCACGTGATGGTGTCAGGGTTTTGATGCTTGTTTGGGATGACAGAACTTCGGTtcctttgttaaaaaaagacGGGTTGATGGCTACTCATGATGAAGAAACCTGGAACTACTTCTACGACAGTGATGTGCACTGTGTTTTATGCCCTCGCAATCCTGATGATGGGGGAAGCAAAATTCAGAACATAGAAATTTCCACCATGTTTACTCACCATCAGAAAATTGTGGTAGTGGACAGTGCTTTGCCGAATGGAAGATCGGATAAGCGAAGAATTGTGAGCTTCGTGGGGGGTATTGATCTCTGTGATGGACGATATGACACTCAATTCCATTCGCTTTTCAGAACCTTGGGCACAGCACATCATGATGATTTTCATCAGCCTAATTTCCCTGGTACTTCAATAAAAAAAGGTGGTCCAAGGGAACCTTGGCATGACATTCACTCTGGACTTGAAGGACCCATTGCATGGGATGTTTTGTTCAACTTTGAGCAAAGATGGAGGAAGCAAGGTGGAAAGGACTTGCTTATTCCACTGAGAGACCTTGAAGATGTCATCATTCCCCCATCCGCAGTAACTCACCCTGAAGATCATGAGACATGGAACGTGCAGTTATTTAGATCCATTGATGGTGGAGCTGCTTTTGGGTTCCCCGAGACTCCTGAAGAAGCTGCTAGATCAGGACTCATTAGTGGGAAGGATAACATAATAGACCGCGGCATTCAAGATGCTTATATCAATGCCATTAGACGCGCAAAGAATTTCATCTACATTGAGAATCAGTATTTCCTTGGAAGCTGTTATGCTTGGAGTGCTGATGGCATTAAGCCTGAAGACATTGGTGCTTTGCATCTGATCCCGAGGGAGCTTTCGCTTAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTTAGTGTGTATATTGTGGTTCCAATGTGGCCAGAGGGTTACCCAGAGAAAGGAACAGTTCAGGCAATATTGGACTGGCAGAGGAGAACAATGGATATGATGTACAAGGATGTTGTTGGAGCACTAAAAGCCAAGGGAATTGAGGAAGATCCTCGGAACTATTTGACATTCTTCTGCCTTGGTAATCGGGAGCTGAAGAAAGAAGGAGAGTACGAGCCTCCAGAAAGACCAGAACCTGATACAGATTATATGAGAGCCCAAGAGTCCCGGCGCTTCATGATTTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATAATTGGATCTGCCAACATAAACCAGAGATCAATGGATGGTGCGAGAGACTCTGAGGTTGCGATGGGTGCATGTCAACCATATCATTTGGCTACCAAGAAGCCTGCGAGGGGTCAGATCCATGGTTTCCGCATGTCATTGTGGTATGAACACCTTGGCTTGCTCCATGACTCCTTCCTCCACCCTGAAAGTGAAGAGTGCATTAAGAAGGTGAACCAGATTGCTGACAAGTATTGGGATATCTACACAACTGAGCCACTTGAGCAAGACCTTCCTGGCCACCTGCTCCGCTATCCTATTGCGATTTCCAGCGAAGGAAGTGTGACACAACTGCAAGCATTTGAATTCTTCCCTGACACCAAGGCTCCTGTTCTTGGGGCCAAATCTGACTACATGCCACCTATCCTTACCACTTAG 2427 0.4421 MAQILLHGTLHATIYEVDKLKAGTSGNILTKLVQNIEEKIGIGKGVPKLYATIDLEKARVGRTRIIEKEHTNPKWYESFHIYCAHMASHIIFTVKDDNPIGATLIGRAYVPVEDVLDGKEIDRWVEILDEHKKPIHSHSKIHVKLQYFDVSKDRNWGQGIRSPKFPGVPYTFFSQRQGCKVSLYQDAHVPDNFVPKIPLAGGHTYQPHRCWEDVFDAINNAQHLIYITGWSVYTEITLVRDSRRPKPGGDATLGELLKKKARDGVRVLMLVWDDRTSVPLLKKDGLMATHDEETWNYFYDSDVHCVLCPRNPDDGGSKIQNIEISTMFTHHQKIVVVDSALPNGRSDKRRIVSFVGGIDLCDGRYDTQFHSLFRTLGTAHHDDFHQPNFPGTSIKKGGPREPWHDIHSGLEGPIAWDVLFNFEQRWRKQGGKDLLIPLRDLEDVIIPPSAVTHPEDHETWNVQLFRSIDGGAAFGFPETPEEAARSGLISGKDNIIDRGIQDAYINAIRRAKNFIYIENQYFLGSCYAWSADGIKPEDIGALHLIPRELSLKIVSKIEAGERFSVYIVVPMWPEGYPEKGTVQAILDWQRRTMDMMYKDVVGALKAKGIEEDPRNYLTFFCLGNRELKKEGEYEPPERPEPDTDYMRAQESRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEVAMGACQPYHLATKKPARGQIHGFRMSLWYEHLGLLHDSFLHPESEECIKKVNQIADKYWDIYTTEPLEQDLPGHLLRYPIAISSEGSVTQLQAFEFFPDTKAPVLGAKSDYMPPILTT 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0120 808 SUPERFAMILY Phospholipase D/nuclease 152 446 - -
Ssu8g0120 808 Pfam Phospholipase D Active site motif 655 681 IPR001736 GO:0003824
Ssu8g0120 808 Pfam Phospholipase D Active site motif 326 364 IPR001736 GO:0003824
Ssu8g0120 808 SMART C2_3c 9 124 IPR000008 -
Ssu8g0120 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 150 IPR035892 -
Ssu8g0120 808 Pfam Phospholipase D C terminal 727 798 IPR024632 -
Ssu8g0120 808 PANTHER PHOSPHOLIPASE D ALPHA 1 2 808 - -
Ssu8g0120 808 SMART pld_4 326 364 IPR001736 GO:0003824
Ssu8g0120 808 SMART pld_4 654 681 IPR001736 GO:0003824
Ssu8g0120 808 Pfam C2 domain 9 127 IPR000008 -
Ssu8g0120 808 Gene3D Endonuclease Chain A 200 440 - -
Ssu8g0120 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Ssu8g0120 808 Gene3D Endonuclease Chain A 482 694 - -
Ssu8g0120 808 SUPERFAMILY Phospholipase D/nuclease 483 738 - -
Ssu8g0120 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824
Ssu8g0120 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824
Ssu8g0120 808 PANTHER PHOSPHOLIPASE D 2 808 IPR015679 -
Ssu8g0120 808 Gene3D C2 domain 6 157 IPR035892 -
Ssu8g0120 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Ssu8g0120 808 CDD C2_plant_PLD 2 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0120 Ssu-Chr8 1927143 1931773 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0120 1 808 Phospholipase D Gene Family (Wang group) AT3G15730 77.901 0.0 1353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0120 K01115 - gmx:100784434 1458.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3428 4 84916495 84918582 Ssu8g0120 8 1927143 1931773 ECH
Ssu8g0120 8 1927143 1931773 Ssu8g0120 8 1927143 1931773 ECH