Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0119 ATGGCGCAAATTCTGCTCCATGGGACTCTCCATGCTACAATCTATGAGGTCGATAAGCTCAAGACTGGTGGCGGCAATTTTTTAACCAAGATCGTCCAAAACATCGAGGAGACTGTTGGTTTTGGAAAAGGTGTCACTAAACTATATGCGACCATTGATCTAGAGAAGGCACGAGTGGGAAGGACCAGAATTATAGAAAAGGAGCATACTAATCCAAGATGGTATGAGTCCTTTCACATTTATTGTGCCCATATGGCATCAAACATCATATTTACGGTGAAAGATGATAATCCTATTGGGGCAACCTTAATTGGAAGAGCATATGTGCCTGTTGAGGAGATCTTGGATGGTGAAGAAATAGATAGATGGGTTGAAATATTGGATGAGCATAAAAATCCAATACGTGGACATTCCAAGATCCATGTGAAGCTGCAATATTTTGATGTTTCAAAAGAAGGCAACTGGGCTCTAGGCATTAGAAGTCCTAAATTTCCTGGAGTTCCTTATACTTTCTTTTCACAAAGAAAAGGATGTAAGGTTTCCCTGTACCAAGATGCTCATGTAcctgacaattttgtccctaaaatacCACTTAGTGGGGGCCGGACTTACCAACCTCATAGATGCTGGGAGGATGTTTTTGATGCAGTCACTAAGGCACGACACTTAATATACATTACCGGTTGGTCTGTCTATACCGAGATTACGTTGGTGAGGGATTCTAGGAGGCCAAAGCCTGGAGGAGATGAAACACTTGGTGAGCTTCTCAAGAAAAAAGCAAGTGAAGAGCAGTACTTCCGGGGCACTGAAGTGCATTGTGTTTTATGCCCTCGCAATCCTGATGATGGTGGAAGCATTGTTCAGGATTTAGAAATTTCCACCATGTTTACTCATCACCAGAAAATTGTAGTCGTGGACAGTGAATTGCCGAGTGGAGAATCTGATAAGCGAAGAATTGTGAGTTTTGTGGGGGGTATTGATCTCTGTGATGGACGATATGACACTCAATTCCATTCACTTTTCAGAACCCTGGACACAGCACATCATGATGATTTTCATCAGCCTAACTTTGGTGGTTCTTCAATAAAAAAAGGTGGTCCCAGGGAACCTTGGCATGATATCCACTCTCGACTTGAAGGGCCTATTGCTTGGGATGTTTTGTTCAACTTTGAGCAGAGATGGAGGAAGCAGGGAGGAAAGGACTTACTTGTTCCACTGAGAGACCTTGAAGATGTCATTATTCCCCCATCCCCAGTAACTTACCCTGATGATCAAGAGACATGGAACGTTCAGTTATTTAGATCCATTGATGGTGGAGCTGCTTTTGGGTTCCCAGAGACTCCTGAAGATGCTGCCCGAGCGGGGCTTGTTAGTGGGAAGGATAATATAATAGATCGTAGTATTCAAGATGCTTATATTAATGCCATTCGACGTGCAAAAAATTTCATCTATATTGAGAATCAGTATTTCCTTGGAAGCTGCTATGCATGGAGTGCTGATGGCATTAAGCCTGAAGACATTGGTGCTTTGCATCTAATCCCGAAGGAGCTTTCACTAAAGATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTCAGTGTGTATATTGTGGTTCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTTCAGGCAATATTGGACTGGCAGAGGAGAACAATGGATATGATGTACAAAGATGTTATTGAGGCGCTCCAGGCCAAGGGAATAGAAGAAAATCCTCGGAACTATCTGACATTCTTCTGCCTTGGTAATCGAGAGGTAAAGAAACAAGGAGAGTACGAGCCTCCAGAAGGACCAGATCCTGATACAGATTATATAAGAGCCCAACAGGCCCGGCGCTTCATGATTTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATTGTTGGATCTGCCAACATAAACCAGAGATCAATGGATGGTGCCAGAGACTCTGAAGTTGCCATGGGTGCTTATCAACCATATCATTTGGCTACGAGGCAGCCTGCAAAGGGTCAGATCCATGGTTTCCGCATGTCATTGTGGTATGAGCACCTTGGCTTGCTTCATGACTCCTTTCTCCACCCTGAAAGTGAAGAATGTATCAGGAAGGTGAACCAGATTGCTGACAAGTATTGGGATCTCTATTCAAGTGAGTCACTTGAGCATGACCTTCCCGGCCACCTACTCCGCTATCCTGTTGGGGTTTCCAGCGAAGGGGTTGTCACAGAGCTTCCAGGATTTGAATTCTTCCCTGACACCAAGGCCCGTGTTCTTGGCGACAAAGTTGACTACATGCCACCCATCCTTACTACTTAG 2331 0.4359 MAQILLHGTLHATIYEVDKLKTGGGNFLTKIVQNIEETVGFGKGVTKLYATIDLEKARVGRTRIIEKEHTNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEILDGEEIDRWVEILDEHKNPIRGHSKIHVKLQYFDVSKEGNWALGIRSPKFPGVPYTFFSQRKGCKVSLYQDAHVPDNFVPKIPLSGGRTYQPHRCWEDVFDAVTKARHLIYITGWSVYTEITLVRDSRRPKPGGDETLGELLKKKASEEQYFRGTEVHCVLCPRNPDDGGSIVQDLEISTMFTHHQKIVVVDSELPSGESDKRRIVSFVGGIDLCDGRYDTQFHSLFRTLDTAHHDDFHQPNFGGSSIKKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVPLRDLEDVIIPPSPVTYPDDQETWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCYAWSADGIKPEDIGALHLIPKELSLKIVSKIEAGERFSVYIVVPMWPEGVPESASVQAILDWQRRTMDMMYKDVIEALQAKGIEENPRNYLTFFCLGNREVKKQGEYEPPEGPDPDTDYIRAQQARRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEVAMGAYQPYHLATRQPAKGQIHGFRMSLWYEHLGLLHDSFLHPESEECIRKVNQIADKYWDLYSSESLEHDLPGHLLRYPVGVSSEGVVTELPGFEFFPDTKARVLGDKVDYMPPILTT 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0119 776 SMART C2_3c 9 123 IPR000008 -
Ssu8g0119 776 Gene3D Endonuclease Chain A 448 669 - -
Ssu8g0119 776 Pfam Phospholipase D C terminal 695 765 IPR024632 -
Ssu8g0119 776 SUPERFAMILY Phospholipase D/nuclease 154 413 - -
Ssu8g0119 776 Pfam C2 domain 9 126 IPR000008 -
Ssu8g0119 776 Pfam Phospholipase D Active site motif 623 649 IPR001736 GO:0003824
Ssu8g0119 776 Pfam Phospholipase D Active site motif 294 332 IPR001736 GO:0003824
Ssu8g0119 776 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 622 649 IPR001736 GO:0003824
Ssu8g0119 776 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Ssu8g0119 776 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Ssu8g0119 776 PIRSF PLD_plant 1 264 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Ssu8g0119 776 PIRSF PLD_plant 262 776 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Ssu8g0119 776 Gene3D C2 domain 6 155 IPR035892 -
Ssu8g0119 776 CDD C2_plant_PLD 2 147 - -
Ssu8g0119 776 SUPERFAMILY Phospholipase D/nuclease 414 706 - -
Ssu8g0119 776 Gene3D Endonuclease Chain A 285 407 - -
Ssu8g0119 776 CDD PLDc_pPLDalpha_2 460 669 - -
Ssu8g0119 776 SMART pld_4 622 649 IPR001736 GO:0003824
Ssu8g0119 776 SMART pld_4 294 332 IPR001736 GO:0003824
Ssu8g0119 776 PANTHER PHOSPHOLIPASE D 263 776 IPR015679 -
Ssu8g0119 776 PANTHER PHOSPHOLIPASE D 2 262 IPR015679 -
Ssu8g0119 776 PANTHER PHOSPHOLIPASE D ALPHA 1 2 262 - -
Ssu8g0119 776 PANTHER PHOSPHOLIPASE D ALPHA 1 263 776 - -
Ssu8g0119 776 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 294 332 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0119 Ssu-Chr8 1907832 1914288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0119 1 776 Phospholipase D Gene Family (Wang group) AT3G15730 77.284 0.0 1330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0119 K01115 - gmx:100784434 1499.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0119 8 1907832 1914288 Ssu4g3428 4 84916495 84918582 PCT