Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0108 ATGGCTTTTTGTCCAATCTTTTGTTGCGGAAATGCTTCGGATCGCAAAGGAAGAGGGAAGAAACAACCTCCATGGCGGGTGTTTTCTTTGAAGGAATTACACTCAGCTACAAATAATTTCAACTATGATAACAAGCTTGGCGAAGGGGGATTCGGCAGTGTATACTGGGGCCAGCTTTGGGATGGATCGCAAATTGCGGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAAGTGGAGATATTGGCTAGAGTACGACACAAGAATCTTCTCAGTCTACGTGGCTATTGTGCAGAAGGTCAGGAACGCTTAATTGTGTATGATTATATGCCGAATTTGAGCCTGCTCTCTCATCTTCATGGACATCACTCAGCAGAGTCCCTCCTCGATTGGAACCGGCGGATGAATATTGCAATTGGGTCTGCTGAGGGAATTGCATATCTTCACCACCAGTCAACACCACACATCATCCACAGAGATATCAAGGCAAGCAATGTGTTGTTGGATTCAGATTTTCAGGCACGGGTTGCTGATTTTGGTTTTGCCAAGTTGATTCCTGATGGGGCAACACATGTGACTACAAGAGTTAAGGGCACCCTAGGCTACCTTGCACCAGAATATGCTATGTTAGGTAAAGCAAATGAGAGCTGTGATGTCTACAGTTTTGGAATTCTCCTCCTAGAACTTGCTAGTGGCAAAAAACCACTTGAAAAACTTAATTCTGCAGTGAAGCGATCAATAAGTGATTGGGCACTGCCATTGGCTTGTGAGAAGAAATTGAGTGAACTAGCAGATCCAAAACTTGAGGGTAACTATGTGGAGGAAGAGCTTAAAAGAGTCGTTCTAATTGCTCTCGTATGTGCTCAGAATCAGCCAGAGAAGAGACCCACCATGCTTGAGGTGGTAGAGCTACTGAAGGGAGAATCCAAAGATAAGTTAGCTCAGCTGGAAAATAATGAACTCTTTAAAAATCCTCCTGCTTTAGGACATACTGATTATGGGACCCCTGCTGCTGAAGGCAGTTCAGATTTCATCTCAGAAGAGAAGGAATCAAAGCCTGAGTTGGAAGAGAATACTGAGCCATGA 1104 0.4393 MAFCPIFCCGNASDRKGRGKKQPPWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGHHSAESLLDWNRRMNIAIGSAEGIAYLHHQSTPHIIHRDIKASNVLLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELASGKKPLEKLNSAVKRSISDWALPLACEKKLSELADPKLEGNYVEEELKRVVLIALVCAQNQPEKRPTMLEVVELLKGESKDKLAQLENNELFKNPPALGHTDYGTPAAEGSSDFISEEKESKPELEENTEP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0108 367 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Ssu8g0108 367 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0108 367 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Ssu8g0108 367 ProSiteProfiles Protein kinase domain profile. 40 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0108 367 PANTHER OS01G0750732 PROTEIN 1 364 - -
Ssu8g0108 367 MobiDBLite consensus disorder prediction 349 367 - -
Ssu8g0108 367 Coils Coil 305 325 - -
Ssu8g0108 367 Gene3D Phosphorylase Kinase; domain 1 11 115 - -
Ssu8g0108 367 MobiDBLite consensus disorder prediction 325 367 - -
Ssu8g0108 367 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0108 367 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Ssu8g0108 367 CDD STKc_IRAK 46 313 - -
Ssu8g0108 367 PANTHER BNAA05G14800D PROTEIN 1 364 - -
Ssu8g0108 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0108 Ssu-Chr8 1776941 1779406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0108 28 314 Trihelix Transcription Factor Family AT1G70460 51.203 7.74e-95 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Ssu8g0108 Pkinase 6.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0108 - - gmx:100788153 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0108 8 1776941 1779406 Ssu8g0108 8 1776941 1779406 ECH
Ssu8g0108 8 1776941 1779406 Ssu4g3446 4 85110958 85111416 PCT