Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0105 ATGGCCGTTATATCCCTCTCTCTGCTTCCACCCTCCACTTGTCCCTGCTTCTGTGGCGCCATCCATCTCCGCTCCCACAACAACTTCGTTTCCATCCATTCCCTTTCTTCTCCCTTCCCTTCCTTCTCCTCAATTTCAAATCCCAACCTCGCTCCCACGCGCCGCCGCTTTCACACTGTCCTCGCCGCTTCCTCCGACTACTATGGCACTCTCGGAGTCCCCAAATCCGCCACCAGCAAGGAAATCAAAGCCGCTTATCGAAGGTTAGCTCGTCAGTACCATCCTGACGTAAACAAGGAGCCTGGGGCAACTGAAAAGTTCAAAGAGATTAGTGCTGCGTATGAGGTGCTATCAGATGATAAAAAGAGGGCTTTATATGATCAATATGGCGAGGCAGGTGTTAAGAGTGCAGTTGGAGGAGGGTCAAGTGCCTATACGACAAATCCGTTTGATTTATTTGAGACATTTTTTGGGCCAAGCATGGGTGGCTTTGCTGGCATGGATCCAACTGGATTTGGAACTCGTCGTCGTAGTACTGTTACTAAAGGTGAAGACATCCGGTATGATTTCTCCTTGGAGTTTTCTGAGGCAATTTTTGGAACAGAGAAAGAATTTGAGCTTTCTCATTTGGAAACATGTGAAGTCTGTACTGGTACCGGAGCTAAGCTCGGCTCCAAGATGAGAGTATGTTCAACTTGTGGTGGAAGAGGTCAGGTGATGAGGACTGAACAAACACCTTTTGGGTTGTTCTCACAGgtTTCAGTATGTCCAAACTGTGGAGGGGATGGTGAAGTCATATCTGAATATTGTCGTAAATGCAATGGTGAAGGACGAATACgggttaagaaaaatattaaaattaaagttccTCCTGGTGTTAGCTCAGGAAGTATTCTAAGAGTTTCTGGAGAGGGCGATGCTGGACCAAGAGGGGGCCCTCCAGGAGATCTTTATGTATATCTTGATGTGCAAGAGATACCTGGAATTCAAAGAGATGACATTAATCTCTGTTCAACAATATCAATCAGTTATCTAGATGCTATACTGGGGGCTGTTGtgaagGTAAAGACAGTTGAAGGCATTTCTGAACTACAAATACCTGCTGGTACCCAACCAGGAGATGTCCTCGTCCTTGCAAGAAAAGGTgtaccaaaattaaataaaccatCAATACGTGGTGACCACCTATTTACAGTTAAAGTTACAATACCAAAACGTATTAGTATAAAGGAGCGTGAGTTGCTTGAAGAACTTGCTTCTCTAGGTGACCCAAGCAGACGTTCAAAATCCCGTCCTAGGACTCACTCTTCTACAGGTGGCACGGAAGGTCCTGCAGCTAGAAGGGATGAAAGTCCAACAGCAACAGTCGaagaaaaaactgaaaaatcagAAGACCAAACTGATATATGGAATAAATTGAAGGACTTTGCTGGATCTGTGGCAAATGGAGCTTTAAAGTGGCTGAAAGATAATCTCTAG 1479 0.4354 MAVISLSLLPPSTCPCFCGAIHLRSHNNFVSIHSLSSPFPSFSSISNPNLAPTRRRFHTVLAASSDYYGTLGVPKSATSKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKSAVGGGSSAYTTNPFDLFETFFGPSMGGFAGMDPTGFGTRRRSTVTKGEDIRYDFSLEFSEAIFGTEKEFELSHLETCEVCTGTGAKLGSKMRVCSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCNGEGRIRVKKNIKIKVPPGVSSGSILRVSGEGDAGPRGGPPGDLYVYLDVQEIPGIQRDDINLCSTISISYLDAILGAVVKVKTVEGISELQIPAGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRISIKERELLEELASLGDPSRRSKSRPRTHSSTGGTEGPAARRDESPTATVEEKTEKSEDQTDIWNKLKDFAGSVANGALKWLKDNL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0105 492 SUPERFAMILY HSP40/DnaJ peptide-binding domain 330 415 IPR008971 GO:0006457|GO:0051082
Ssu8g0105 492 Gene3D - 213 277 - -
Ssu8g0105 492 Pfam DnaJ domain 66 127 IPR001623 -
Ssu8g0105 492 MobiDBLite consensus disorder prediction 451 468 - -
Ssu8g0105 492 Pfam DnaJ C terminal domain 186 404 IPR002939 -
Ssu8g0105 492 Gene3D - 183 319 - -
Ssu8g0105 492 CDD DnaJ 66 119 IPR001623 -
Ssu8g0105 492 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Ssu8g0105 492 ProSiteProfiles Zinc finger CR-type profile. 200 282 IPR001305 GO:0031072|GO:0051082
Ssu8g0105 492 PANTHER MOLECULAR CHAPERONE HSP40/DNAJ FAMILY PROTEIN 54 431 - -
Ssu8g0105 492 PRINTS DnaJ domain signature 102 122 IPR001623 -
Ssu8g0105 492 PRINTS DnaJ domain signature 68 86 IPR001623 -
Ssu8g0105 492 PRINTS DnaJ domain signature 86 101 IPR001623 -
Ssu8g0105 492 PRINTS DnaJ domain signature 122 141 IPR001623 -
Ssu8g0105 492 Gene3D - 329 421 - -
Ssu8g0105 492 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Ssu8g0105 492 Gene3D DnaJ domain 63 168 IPR036869 -
Ssu8g0105 492 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 54 431 - -
Ssu8g0105 492 CDD DnaJ_zf 213 277 IPR001305 GO:0031072|GO:0051082
Ssu8g0105 492 SUPERFAMILY HSP40/DnaJ peptide-binding domain 181 324 IPR008971 GO:0006457|GO:0051082
Ssu8g0105 492 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 200 280 IPR036410 -
Ssu8g0105 492 SMART dnaj_3 65 122 IPR001623 -
Ssu8g0105 492 TIGRFAM DnaJ_bact: chaperone protein DnaJ 66 420 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Ssu8g0105 492 MobiDBLite consensus disorder prediction 420 468 - -
Ssu8g0105 492 SUPERFAMILY Chaperone J-domain 62 172 IPR036869 -
Ssu8g0105 492 Pfam DnaJ central domain 213 277 IPR001305 GO:0031072|GO:0051082
Ssu8g0105 492 CDD DnaJ_C 184 407 - -
Ssu8g0105 492 Hamap Chaperone protein DnaJ [dnaJ]. 63 476 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0105 Ssu-Chr8 1723281 1732509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0105 67 173 C2H2 Transcription Factor Family AT1G74250 37.719 1.64e-10 61.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0105 8 1723281 1732509 Ssu8g0105 8 1723281 1732509 ECH