Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0091 ATGGATCGGGAATGGGGATCGAAGCCAGGGAGCGGAGGAGCGGCGTCGGCGCAGAACGAAGCCATCGACCGGCGAGAGCGTCTCCGGCGACTGGCTCTGGAGACGATAGACCTCGCGAAGGATCCCTACTTCATGCGCAACCACCTCGGGAGCTACGAGTGCAAATTGTGCCTCACACTCCACAACAACGAGGGAAACTACTTGGCCCACACTCAGGGCAAGCGCCACCAGACCAACTTGGCCAAGCGTGCTGCTCGCGAGGCTAAGGACGCCCCCGCCCAGCCCCAACCCCACAAGCGCAAAGTCACCCTCCGCAAAACAGTTAAGATTGGGCGGCCTGGGTACCGTGTGACCAAGCAGTATGATCCGGAGACCAAGCAAAGATCTCTCCTGTTTCagATTGAGTATCCTGAGATCGAAGACCTCACGAAGCCGAGGCACCGTTTTATGTCCTCCTACGAGCAGAGGGTGCAACCCTTTGATAAAAGATATCAGTATCTTTTATTTGCAGCTGAACCGTATGAAATAATTGCTTTCAAGGTGCCTAGCACAGAGATTGACAAGTCCACTCCAAAGTTTTTCTCGCACTGGGATCCAGACTCAAAGATGTTCACACTGCAATTGTATTTTAAATCCAAGCCACCAGAGACAAACAAAGCACAGCCTGCCTCTACAGCCAATGGCACTGCAGCATCTGGTGCTCCTCCACCAAGGCCTTTGCCCCCACCACCCCAAGCTCCACTaccaccacctccacctcctccaCAAGGACTACCTCCTGGTGCACCTATGGCAAATCCTCCTAGAGCTCCTCCACCTCCAATGCCAGGATCAATGCCACCTCCTCCTCCTATGGCAGCAGCTAACGGTCCTAGACCTGCACCTTCTAGTGGAATGCCATCTGTCCCACCGCCACCCCCTGTTGCCAGTGGGACATCGGGTTTCAACATGGGTACTAGACCTCCATCAATGCCACCTCCACAAGGTTTTCCTGCCCAACCAATGCTGAGCCAGGGTGTCCGTCTTCCTCCACCACCCCCTAACATGGGACAGTAG 1056 0.5388 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVTLRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPPETNKAQPASTANGTAASGAPPPRPLPPPPQAPLPPPPPPPQGLPPGAPMANPPRAPPPPMPGSMPPPPPMAAANGPRPAPSSGMPSVPPPPPVASGTSGFNMGTRPPSMPPPQGFPAQPMLSQGVRLPPPPPNMGQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0091 351 SMART CactinC_cactus_3 89 216 - -
Ssu8g0091 351 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Ssu8g0091 351 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Ssu8g0091 351 MobiDBLite consensus disorder prediction 214 351 - -
Ssu8g0091 351 Gene3D - 94 219 - -
Ssu8g0091 351 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Ssu8g0091 351 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Ssu8g0091 351 Pfam Zinc-finger of C2H2 type 52 76 - -
Ssu8g0091 351 MobiDBLite consensus disorder prediction 1 21 - -
Ssu8g0091 351 Gene3D Classic Zinc Finger 46 89 - -
Ssu8g0091 351 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 343 - -
Ssu8g0091 351 MobiDBLite consensus disorder prediction 234 310 - -
Ssu8g0091 351 MobiDBLite consensus disorder prediction 320 351 - -
Ssu8g0091 351 MobiDBLite consensus disorder prediction 214 231 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0091 1 298 C2H2 Transcription Factor Family AT2G32600 74.497 1.51e-137 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0091 K12826 - gmx:100791333 450.669