Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0090 ATGTCTCACAGAACGGatactaataattattcttCTTTACCCATTAGCGCATACCTAGAATTGCAGCCTCAAAATGATTCCTCAAAATCCTTCCAAAGGCCTCCTTTTGACGAAGCCGAGGTATATTTGGGATCCAAGGtggacgacgacgacgacgatgaCGATTTAGAAATCGACATCGATAATTATCcccttgttgttgttgggtcTAATCACGGTTCTGGGGTACCCGGGGCCGTGTTCAATTTAACCACTACCATTATTGGGGCAGGGATTATGGCCCTCCCTGCTACCATGAAAGTTCTTGGAATGGTTTTGGGGATTATACTGATAATTATTATAGGAATTTTGTCTGAAATTAGTGTGGAATTGTTGGTGAGGTTTTCTGTTTTGTGTAAGGCATCTTCCTATGGGGAGGTTGTTCAGCATGCTATGGGAAGGCCTGCGAGGATTTTGTCTGAAATTTGTATTATTGTGAACAATGCTGGTGGTTTGGTGGTTTACTTGATTATCATGGGGGATGTTATGTCTGGTTCCGTTCACCATTTGGGGGTTTTTGATCAGTTAATGGGGAACGGGGTGTGGGATCAGAGGAAGCTTGTGATTCTTGTTATCATGGTGGTTTTTCTTGCGCCACTTTGCTCGCTTGACAAGATTGATTCGTTGAGCTTGACCTCGGCTGCCTCGGTGGCTCTTGCTGTCTTGTTTGTCATTGTTGCTTTTACTGTTGCTTTCATTAAGCTCGTGGAAGGGCGGATTGATGCTCCCAGGATGGTTCCTGATCTTAGCTCCAAAACCTGCGATTTTGGATTTGCTTGTTGTGATTCCCATCATGACCAATGCGTATGTTTGCCATTTTAA 861 0.41 MSHRTDTNNYSSLPISAYLELQPQNDSSKSFQRPPFDEAEVYLGSKVDDDDDDDDLEIDIDNYPLVVVGSNHGSGVPGAVFNLTTTIIGAGIMALPATMKVLGMVLGIILIIIIGILSEISVELLVRFSVLCKASSYGEVVQHAMGRPARILSEICIIVNNAGGLVVYLIIMGDVMSGSVHHLGVFDQLMGNGVWDQRKLVILVIMVVFLAPLCSLDKIDSLSLTSAASVALAVLFVIVAFTVAFIKLVEGRIDAPRMVPDLSSKTCDFGFACCDSHHDQCVCLPF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0090 286 Pfam Transmembrane amino acid transporter protein 73 244 IPR013057 -
Ssu8g0090 286 PANTHER AMINO ACID TRANSPORTER 47 266 - -
Ssu8g0090 286 PANTHER BNAC06G40470D PROTEIN 47 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0090 Ssu-Chr8 1488371 1489231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0090 8 267 Amino Acid or Auxin Permease AAAP Family AT1G80510 62.868 9.44e-96 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0090 - - gmx:100813328 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0090 8 1488371 1489231 Ssu8g0090 8 1488371 1489231 ECH