Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0088 ATGTTGCTGAAAGGATCTGCTTCTGAATTACTCTTGTTCCTGGCAATTGGAATTCCTGTTTTATGTTTAGTTATGATGTGCTTCATTCGGCCTTGTACTCCTCCTTCTGGGGAAGACTCTTCGGTGCAtgtgcattttatttttgccCAAGTTGCAAGTGTTTTACTTGCCTCCTATCTTGTTATCACCACGATAGTGAGTGACATGGTCTCTATAAATGATGCTGTTTCCTACATCTTACTTGCCATAATGATTATACTCCTGATGACTCCCCTAGCAATTCCTCTCAAAATAACACTATTTCCTGCTAATTCAAAGAACAATGTTCCACTGGTTGGTTCTTCAGATCTTTTGGCATCAGGTGATGATCTTTCAACGCAAGCAAGTCCATTGCTGACACCATCTTCCTCAGCTGCCAATCTTGGAAGTTTTCGTGAAAGTGAGGATGCTTCCGATGTTGAGATACTCATTGCAGAAGGGGAGGGAGCAATAGGGAGGAAAAGGAGACCTAAGAGGGGAGATGATTTCAAGTTCCGCGAAGCTGTGATCAAGGCTGACTTCTGGCTTCTTTGGTTTGCTTATTTTCTTGGGGTTGGTTCAGGAGTAACAGTTCTCAACAATTTGGCTCAAATTGGAGTTGCCTTGGGTGAAGAAAATACAACCATATTGCTGTCAGTTTTCAGCTTTTGCAATTTTGTGGGTCGTCTTGGTGCTGGTGCTGTTTCTGAACACTTTgttagGTTGATAACACTACCTCGAACATTTTGGATGACAAGTGCACAAATAATTATGATCGTTGCATTTTTGCTTTACGCTTCTGCTCTTGATGGCACTCTTTATGCTTCAACGGCTTTGCTTGGGATCTGCTATGGGGTTCAATATTCTATAATGATTCCAACTGTCTCTGAGCTTTTTGGTTTGAGGCACTTTGGTGTTATTAGTAGTTTCATGATGCTAGGCAATCCAATTGGTGCCGTTATTTTCTCTGTTTTCCTTGCTGGCAATGTGTATGATGCAGAAGCTGCAAAGCAAGGAAACTCCACCTGCTACGGTGCAAATTGCTTCAGGCTCACTTTTCTGGTTTTGTCTGGTGTCTGTGGACTTGGTACCATCTTGAGTATAATTTTGACAGTTAGAATACGACCAGTATATCAAATGCTGTATGCTGGAGGTACATTTCGTCAATCCCAGACTTCAAACCCCTga 1206 0.4129 MLLKGSASELLLFLAIGIPVLCLVMMCFIRPCTPPSGEDSSVHVHFIFAQVASVLLASYLVITTIVSDMVSINDAVSYILLAIMIILLMTPLAIPLKITLFPANSKNNVPLVGSSDLLASGDDLSTQASPLLTPSSSAANLGSFRESEDASDVEILIAEGEGAIGRKRRPKRGDDFKFREAVIKADFWLLWFAYFLGVGSGVTVLNNLAQIGVALGEENTTILLSVFSFCNFVGRLGAGAVSEHFVRLITLPRTFWMTSAQIIMIVAFLLYASALDGTLYASTALLGICYGVQYSIMIPTVSELFGLRHFGVISSFMMLGNPIGAVIFSVFLAGNVYDAEAAKQGNSTCYGANCFRLTFLVLSGVCGLGTILSIILTVRIRPVYQMLYAGGTFRQSQTSNP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0088 401 SUPERFAMILY MFS general substrate transporter 45 382 IPR036259 -
Ssu8g0088 401 Pfam Nodulin-like 2 96 IPR010658 -
Ssu8g0088 401 Gene3D MFS general substrate transporter like domains 181 384 IPR036259 -
Ssu8g0088 401 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 1 400 - -
Ssu8g0088 401 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 1 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0088 Ssu-Chr8 1468746 1470237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0088 1 400 Nodulin-like Gene Family AT1G80530 60.599 2.08e-174 496
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0088 - - adu:107459780 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0088 8 1468746 1470237 Ssu8g0088 8 1468746 1470237 ECH