Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0080 ATGTGGAGTTCAACTTCAAGCACAGCGATAGCAGCACCCTCCTCCAACGAGGAGCCTAGTGAATcgtcctcctcctccttctccaCCTCTTTGTTCAATTTCTCTTCTGGAAACCCTAGAATCGAGGAGACTCGCGGCCTCATGCATCTCTTCCCCGACGACACTCCTGTTACTCTTCCCGTTGGACGGAAGCCTCTCGTCTGTGTTGTGGGCGTGCCAAATCACATGACCTATGCGGATTTCTGCCAGTTCTGTGGTTCATTCATTCAGCATATGCTAGAGATGCGCATTGTCAGGATGGATGGGATGGAGGATCAGTACAGTGTTTTAATTCGCTTTGACGACCAAGACTCCACCGACAGCTTCTACAAGCACTACAATGGCCGCCGTTTCTCATCTCTCGAGGTTGAGGTTTGCCGTGTTCTTTTCACATTAGACGTGCAGTACACTGGTTCCATTGAACATGCACAACCCTCCAATGCCAGTTCAACTGAACAGCCTACCTGTCCTGTTTGCCTTGAGCGATTAGATCAGGACACAGGTGGAATTCTTACGACTATATGCAATCATTCTTTCCATTGTTCCTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATATGTTTTGGTTGTCAAACCACTGAGAACCTGTGGATATGTGTTATATGTGGGTATGTTGGCTGTGGAAGATACAAGGGGGACATGCTATTATACACTGGAAAGAGACACAGCATTGCTATTccctag 783 0.4521 MWSSTSSTAIAAPSSNEEPSESSSSSFSTSLFNFSSGNPRIEETRGLMHLFPDDTPVTLPVGRKPLVCVVGVPNHMTYADFCQFCGSFIQHMLEMRIVRMDGMEDQYSVLIRFDDQDSTDSFYKHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNASSTEQPTCPVCLERLDQDTGGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFGCQTTENLWICVICGYVGCGRYKGDMLLYTGKRHSIAIP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0080 260 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 258 IPR013083 -
Ssu8g0080 260 CDD RRM_BRAP2_like 67 148 - -
Ssu8g0080 260 ProSiteProfiles Zinc finger UBP-type profile. 203 260 IPR001607 GO:0008270
Ssu8g0080 260 PANTHER BRCA1-ASSOCIATED PROTEIN 11 245 - -
Ssu8g0080 260 Pfam Ring finger domain 168 209 IPR001841 -
Ssu8g0080 260 ProSiteProfiles Zinc finger RING-type profile. 169 209 IPR001841 -
Ssu8g0080 260 CDD RING-H2_BRAP2 167 210 - -
Ssu8g0080 260 MobiDBLite consensus disorder prediction 1 26 - -
Ssu8g0080 260 SUPERFAMILY RING/U-box 168 213 - -
Ssu8g0080 260 SUPERFAMILY RING/U-box 185 246 - -
Ssu8g0080 260 SMART ring_2 169 208 IPR001841 -
Ssu8g0080 260 Pfam BRCA1-associated protein 2 60 156 IPR011422 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0080 Ssu-Chr8 1340042 1341674 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0080 165 209 C3H Transcription Factor Family AT1G72220 46.809 2.39e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0080 K10632 - gmx:100794688 470.314