Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0077 ATGATGAATAATAACTCATCCATCATCATGTCTCAACATTCTGCAGACAAGCCAACCTCGTCTCCAACCACTTATATACTGTCTTTCGACAAATCTGCTGCATTATTGTTACCAACTGATCGTGATTCTTATTGCGCTGCTTGGAAAGAGGTCTCCCAATCCCAATTGCCCAAAGACACTTTGCCTTTGTCCAAATTAAGGCCGAACCAAAGAACCAAGAAGACTCGAAGCGCTTCTGAGTCACTGGATCACATAATGTCAGAGAGAAATAGGAGACAGGAGCTCACAAGGAAGTTCATAGCACTTGCAGCCACTATCCCCAGCTTGAAGAAGATGGACAAGGCCCATGTACTAAGAGAAGCCATCAATTACGTGAAAGCACTGCAAGAACGTGTTGAAGAGCTAGAAGAATATATCCAGAAAAACGGTGTAGAATCAGCGATAACCATAACAAGATCTCATCTCATTGATGATGACACGAACACTGACGAGTGCTGTGGGCCCAATGAAGCACTTCCTGAAGTTGAACTGAGAGTGTTAGGGAAGGAAGTGTTAATCAAAATTCACTGTGGCAAAAAAAAGGGAATTCTGCTCAAAATAATGTCTCAGCTTGAAAGTCTTCATCTCTACATATCCGCTAGCAATGTCTTGCCATTTGGGAATACCCTTGACATCACCATTATTGCTCAGATAGGTGACAAATACAACTTGGTAGTGAAGGATCTGGTGAAAGAACTGAGACAAGTGGCTATGATGAAGTCACATGATGTGCAACAATGA 780 0.4231 MMNNNSSIIMSQHSADKPTSSPTTYILSFDKSAALLLPTDRDSYCAAWKEVSQSQLPKDTLPLSKLRPNQRTKKTRSASESLDHIMSERNRRQELTRKFIALAATIPSLKKMDKAHVLREAINYVKALQERVEELEEYIQKNGVESAITITRSHLIDDDTNTDECCGPNEALPEVELRVLGKEVLIKIHCGKKKGILLKIMSQLESLHLYISASNVLPFGNTLDITIIAQIGDKYNLVVKDLVKELRQVAMMKSHDVQQ 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0077 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 128 IPR011598 GO:0046983
Ssu8g0077 259 Pfam Helix-loop-helix DNA-binding domain 84 129 IPR011598 GO:0046983
Ssu8g0077 259 Gene3D - 68 143 IPR036638 GO:0046983
Ssu8g0077 259 MobiDBLite consensus disorder prediction 1 22 - -
Ssu8g0077 259 PANTHER BHLH TRANSCRIPTION FACTOR 2 257 - -
Ssu8g0077 259 Coils Coil 118 145 - -
Ssu8g0077 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 84 151 IPR036638 GO:0046983
Ssu8g0077 259 SMART finulus 85 134 IPR011598 GO:0046983
Ssu8g0077 259 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 2 257 - -
Ssu8g0077 259 MobiDBLite consensus disorder prediction 59 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0077 Ssu-Chr8 1309370 1315224 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0077 75 247 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.191 1.28e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g0077 HLH 6.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0077 - - aprc:113854852 359.762