Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0076 ATGTTGCATGTTCacatttttgaagaaaaagaagttttgTATTTTACATCAATTTGTTTGTTGGCTTCCGGCCAATATGTACAGATAGACAAGGCCTCTGTACTTGGGGAAGCTATTAATTTCGTGAAACAACTTCAAGGACGCACAGCAGTGCTGGAGCAGGAGAGTAAGAAGAAAAGTACCAAGTCGCATCTAATCCCTGAAGTCGAAGCAATAGGCTTAGAGTTAGAGAGGGAACTACTTATTAGAATTCTTTGTGAGAAACGAAAGGGCATCTTGCTCAAACTACTGACCTTACTTGGAAATAAACATCTTGCTATTGTCAGTAGCAGCGTACTGCCATTTGGAAAAAATGCTCTCAACATTACGATTATTGCTCAGATGGGTGAGGAATACAACACGACAGGGGATGAATTGGTGAAAAGCCTGACACAAGATCTTTAG 444 0.3874 MLHVHIFEEKEVLYFTSICLLASGQYVQIDKASVLGEAINFVKQLQGRTAVLEQESKKKSTKSHLIPEVEAIGLELERELLIRILCEKRKGILLKLLTLLGNKHLAIVSSSVLPFGKNALNITIIAQMGEEYNTTGDELVKSLTQDL 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0076 147 PANTHER BHLH TRANSCRIPTION FACTOR 28 147 - -
Ssu8g0076 147 Gene3D - 9 77 IPR036638 GO:0046983
Ssu8g0076 147 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 28 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0076 Ssu-Chr8 1269681 1270309 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0076 9 143 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 34.969 1.23e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0076 - - gmx:100809351 143.665