Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0075 ATGGAGAAGTTCATAGCACTTTCAGCCACTATTCCTGGCTTGAAGAAGacGGACAAGAGTTCTATACTTCGCGAAGCAATTCATTATGTGAAACAACTTCAAGAACGTGTGACGGAGCTAGAACAGAGAAACAAGAGAGTGAAAGAATCAATGGTAATTCTCAAGAAGACTGATCTGTGTGGAAATGAAGATACCACCTCAAACCCAGCGAAATGCTCCCTGATGTTGAAGCAAGAGTCAGTGGAGAATAAGGTACTGATTGAGATCCATTGTGAAAAGGAAGATGGGGTTGGGCTCAAAATATTGGATCAGCTTGAAAATCTTCATCTCTGTGTCACCGGCAGCAGCGTATTGCCGTTTGGGAATTCAACTCTTGGCATTACTATTATCGCTCAGATGGGTGATGCATACAGAATGACGGTGCATGATCTAGTGAAAAATCTAAGGCAAGTGCTGTTGAATCATATACACACTAATACCGATCCGTACTAG 492 0.4207 MEKFIALSATIPGLKKTDKSSILREAIHYVKQLQERVTELEQRNKRVKESMVILKKTDLCGNEDTTSNPAKCSLMLKQESVENKVLIEIHCEKEDGVGLKILDQLENLHLCVTGSSVLPFGNSTLGITIIAQMGDAYRMTVHDLVKNLRQVLLNHIHTNTDPY 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0075 163 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 33 IPR011598 GO:0046983
Ssu8g0075 163 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 2 54 IPR036638 GO:0046983
Ssu8g0075 163 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 2 156 - -
Ssu8g0075 163 Pfam Helix-loop-helix DNA-binding domain 6 34 IPR011598 GO:0046983
Ssu8g0075 163 Coils Coil 23 57 - -
Ssu8g0075 163 Gene3D - 1 57 IPR036638 GO:0046983
Ssu8g0075 163 PANTHER BHLH TRANSCRIPTION FACTOR 2 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0075 Ssu-Chr8 1238162 1241543 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0075 2 156 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.732 3.53e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g0075 HLH 0.00013 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0075 - - aprc:113856039 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g3470 4 85511768 85521617 Ssu8g0075 8 1238162 1241543 PCT