Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0074 ATGGAGGTGCCATGGCAAAATTTGTTCTTCGAAATGGAAATGGAGGAAGATGGTGATTTGTTGAACCATGAGCACAAGAACTCATTATTGGACGATCAAGAAACGGTTCTTGAAGAGTTCCTGCAACAGTTTGCTTTGTCCCCTGAGAGCGAAAGTCACTCACCCTCAATTATTCAGAATAACTCCGTCACTGGCTTCCCCAATGACAAACTTTTGACAAAGAGCAACAGTTCCAACCATGTTATTAATGCTTCCCACACAACCACTCCCTCATCGTCCTACATTCTGCCTTTCCATGACTCCACCGGAGTAGCAGCTACCTGCGACCAATGTTGTGGTCCTGGCCGCGCAAAAGGGGCCAACCAAACAAGGAAATCTAGGACCTCTTCCGAGTCAGGGGACCGCATCATGGCTGAGAGAAAAAGGAGACAGGACCAGTCCCAGAGATTCATAGCGCTGTCAGCCATTATTCCTGGCTTAAAGAAGATTGACAAGGCATCGATACTTAAGGAAGCAATCGCTTACATAAAACATCTTCAAAATCGAACGAGAGAGTTGGAGGAACATGGCCCCAGGAAGATAAACGTAGGGTCAGTGTCGTTCATCGATAAAACTGACTTCAAAGGCACGAACTCTGCTGATTGCAATGGACTTAATGTAGCACTCCCTGAACTTGGAGCAAGAGTCCTGGAAAAGGATGTATTCATCCGAATCCACTGCGAGAAACACGAAGGCGTTTTGCTCAAAATATTGACGCATATTACAAGCCTTGATCTCTCCCTTGTAAGCAAAAGCGTCTTACCATTTGGGAATTGTGCCCTCTACATTACCATTATTGCTCAGATGGGTGACAAATACAACGTAACTGTGAAGGATCTACTCAAAAGCTTGAGACGGGTTATCTTGCAGTCACCTGTCGCATAA 924 0.4545 MEVPWQNLFFEMEMEEDGDLLNHEHKNSLLDDQETVLEEFLQQFALSPESESHSPSIIQNNSVTGFPNDKLLTKSNSSNHVINASHTTTPSSSYILPFHDSTGVAATCDQCCGPGRAKGANQTRKSRTSSESGDRIMAERKRRQDQSQRFIALSAIIPGLKKIDKASILKEAIAYIKHLQNRTRELEEHGPRKINVGSVSFIDKTDFKGTNSADCNGLNVALPELGARVLEKDVFIRIHCEKHEGVLLKILTHITSLDLSLVSKSVLPFGNCALYITIIAQMGDKYNVTVKDLLKSLRRVILQSPVA 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0074 307 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 304 - -
Ssu8g0074 307 PANTHER BHLH TRANSCRIPTION FACTOR 4 304 - -
Ssu8g0074 307 SMART finulus 136 185 IPR011598 GO:0046983
Ssu8g0074 307 MobiDBLite consensus disorder prediction 128 143 - -
Ssu8g0074 307 Gene3D - 120 192 IPR036638 GO:0046983
Ssu8g0074 307 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 189 IPR036638 GO:0046983
Ssu8g0074 307 Coils Coil 169 189 - -
Ssu8g0074 307 Pfam Helix-loop-helix DNA-binding domain 137 180 IPR011598 GO:0046983
Ssu8g0074 307 MobiDBLite consensus disorder prediction 114 143 - -
Ssu8g0074 307 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0074 Ssu-Chr8 1196004 1197693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0074 126 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.623 1.31e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu8g0074 HLH 6.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0074 - - lang:109357653 278.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0074 8 1196004 1197693 Ssu4g3471 4 85541671 85545021 PCT