Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0071 ATGAATCTTCTTGTTCTGTTCCTGTCTATTTGGGTGCTATGCATTTCTCTTTCCTCAACAATTCTTCATGCTGCGTCCTCTGTTTCTGTTTCTCAATCTTCTGCAAATGCACAAGCTGAATCCCCAGTTATTCAGGAGGTTAAAATAGTGCACCACCAGAATTTGAATAAGAGAATTCTAATTGCACTAGTTGCTTGTTCTTCTCTACTTGGTGGAGTCTTCCTATTCTTGTTATATGTCTGGTTCCGTCGACATAAAAACTTAAAAGGCTCCAGTAGTAAAAGCCAAGAAACCATTGAGGCTGCAAAAGGGGAAACCTTAAGCTCTGTTAATGCTAAACTTAACTACTCTAAGATGGCAGATAAGAAGAGTTCAGTTGCTATTTTTGACTATCAGCTGTTAGAGGCTGCAACAAACAGCTTTAGCACAAGTAATATTATGGGAGAGAGTGGTTCTAGAATCATTTACAGAGCTCGTTTTGATGAACATTTCCAGGCAGCTGTGAAGAAAGCAGATAGCGATGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATCCGGCATCAGAATATCATAAAACTAATGGGTTATTGTATACATGGTGAATCGAGGTTTCTTGTTTATGAACTGATGGAGAATGGATCTCTAGAAACTCAATTGCATGGGCCTAATCGGGGGTCATCTTTAACTTGGTATCTCAGGTTAGGAATTGCTGTTGATGTTGCCAGaGCGTTAGAATATCTCCACGAGCACTCCAATCCTCCTGTGGTTCATAGAGACCTAAAATCTTCCAATGTTCTTCTGGATTCTAACTTTAATGCCAAGTTATCAGATTTTGGATTTGCCATGGTTTCTGGAATGCAACACAAGAACATGAAGATGTCAGGAACTTTAGGATATGTGGCCCCTGAGTACATATCCCATGGTAAACTAACTGATAAGAGCGATGTCTATGCTTTTGGGGTTGTCCTTCTAGAACTTCTAACCGGAAGAAAACCCATGGAGAGCATGTCCTCGCACCAGTATGAATCCCTTGTATCATGGGCCATGCCCCAGCTAACTGACAGATCGAAGCTGCCAAGTATTCTGGATCCTGTTATCAGAAACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTACTCTGCGTGCAAGCAGAACCAAGTTATAGGCCACTAATAACAGATGTGTTGCACTCTCTCATCCCTTTGGTACCCGTTGAGCTTGGAGGGTCACTAAGAGTTACAGAACCGATCAGCTCAGAGAACTCTCattga 1296 0.4144 MNLLVLFLSIWVLCISLSSTILHAASSVSVSQSSANAQAESPVIQEVKIVHHQNLNKRILIALVACSSLLGGVFLFLLYVWFRRHKNLKGSSSKSQETIEAAKGETLSSVNAKLNYSKMADKKSSVAIFDYQLLEAATNSFSTSNIMGESGSRIIYRARFDEHFQAAVKKADSDADREFENEVSWLSKIRHQNIIKLMGYCIHGESRFLVYELMENGSLETQLHGPNRGSSLTWYLRLGIAVDVARALEYLHEHSNPPVVHRDLKSSNVLLDSNFNAKLSDFGFAMVSGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPMESMSSHQYESLVSWAMPQLTDRSKLPSILDPVIRNTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPVELGGSLRVTEPISSENSH 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0071 431 Pfam Protein tyrosine and serine/threonine kinase 161 369 IPR001245 GO:0004672|GO:0006468
Ssu8g0071 431 PANTHER OS01G0253100 PROTEIN 15 422 IPR045271 GO:0004714|GO:0006468
Ssu8g0071 431 SUPERFAMILY Protein kinase-like (PK-like) 117 407 IPR011009 -
Ssu8g0071 431 Gene3D Transferase(Phosphotransferase) domain 1 214 412 - -
Ssu8g0071 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Ssu8g0071 431 PANTHER RECEPTOR-LIKE KINASE 15 422 - -
Ssu8g0071 431 Gene3D Phosphorylase Kinase; domain 1 101 213 - -
Ssu8g0071 431 SMART serkin_6 141 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0071 431 ProSiteProfiles Protein kinase domain profile. 141 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0071 Ssu-Chr8 1146837 1150477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0071 1 353 Receptor kinase-like Gene Family AT1G80640 47.838 6.45e-111 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Ssu8g0071 PK_Tyr_Ser-Thr 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0071 - - gmx:100811188 743.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0071 8 1146837 1150477 Ssu8g0071 8 1146837 1150477 ECH