Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0068 ATGGTGTTGCTTATTGTCAACTCAACCATTAGTTTTATTGAAGAAAACAATGCAGGCAACGCTGCTGCAGCCCTTATGGCAGGCCTTGCTCCCAAAACCaagGTTCTGAGAGATGGAAGGTGGACAGAGCAGGAGGCATCTATACTGGTACCAGGAGATATAATTAGCATCAAATTGGGAGACATCATCCCAGCCGATGCTCGACTCTTGGATGGAGATGCCCTCAAGATTGATCAGTCTGCACTCACTGGTGAGTCCTTGCCTGTTTCTAAGCACCCTGGTGATGAAGTCTTCTCTGGCTCCACAGTCAAGCAAGGAGAGCTTGAGGCTGTTGTAATCGCTACTGGGGTCCACACCTTCTTCGGTAAGGCTGCTCATTTAGTGGACAGCACTAACCAAGTTGGCCATTTCCAAAAGGTGTTGACAGCCATTGGTAACTTCTGCATTTGCTCAATTGCTTTGGGTATGATCATAGAGATTGTTGTCATGTATCCAATTCAGCACCGCAAGTATAGGAGCGGAATTGACAATCTCTTGGTGCTTCTCATTGGAGGGATTCCCATTGCCATGCCAACAGTCTTGTCAGTGACAATGGCTATTGGTTCCCACAGACTGTCCGAGCAAGGTGCTATCACCAAGAGGATGACAGCCATTGAGGAGATGGCTGGAATGGATGTCTTATGTAGTGACAAAACTGGCACTCTAACACTGAACAAGCTTACAGTAGACAAGAGTTTGGTTGAGGTTTTCGCAAGAGATGCTGACAAGGATACAGTAATTTTGCTTGGGGCTAGGGCCTCCAGGGTGGAGAACCAAGATGCTATTGATGCTTGCATTGTAGGAATGTTGGGTGATCCAAAGGAgGCTAGAGATGGCATTACAGAGGTGCATTTCCTGCCGTTTAATCCAGTGGACAAGCGCACAGCCATAACATACGTAGACACTGAGGGTAACTGGCACCGAGTAAGCAAAGGAGCACCAGAGCAGATTATCGAACTTTGCAACCTTCGGGAAGAGGTGAAGAAGAAGGCTCATTCCATCATTGATAAATTTGCTGATCGCGGTCTTCGTTCCCTTGCTGTTGCTAAACAAGAAGTGCCAGAAAGGAACAAGGAGAGTGCAGGAGGACCGTGGCAGTTTGTGGGACTGTTGCCACTTTTTGACCCACCAAGGCACGACAGTGCTGAGACCATAAGGCGTGCTCTCAATCTGGGAGTGAACGTTAAGATGATCACTGGGGATCAGCTAGCTATTGGTAAAGAAACTGGTCGCAGGCTTGGCATGGGAAGCAACATGTACCCTTCATCCTCTCTCCTTGGTGAGCACAAGGATGAGTCCATTGCTGGCCTTCCAGTTGATGAACTTATTGAGAAGGCTGATGGCTTTGCTGGTGTCTTCCCTGAGCACAAGTATGAGATTGTGAAGAAACTTCAGGAAAGAAAGCACATATGTGGTATGACAGGAGATGGTGTCAACGATGCTCCTGCGCTCAAAAAAGCGGATATTGGAATTGCTGTGGCTGATGCAACCGATGCAGCTCGAGGTGCATCTGACATTGTCCTCACCGAGCCTGGCTTGAGTGTCATTGTGAGTGCAGTGCTGACAAGTAGAGCCATCTTCCAGAGAATGAAGAACTACACCATATATGCTGTTTCTATAACAATCCGAATAGTGCTGGGCTTTTTGTTGCTTGCTCTCATCTGGAAGTTTGACTTCTCACCTTTTATGGTTTTGATCATTGCCATACTCAATGATGGCACCATCATGACCATTTCCAAGGATAGGGTGAAGCCATCTCCTGTGCCAGATTCCTGGAAGCTCAGAGAGATCTTCACCACTGGCGTTGTGCTTGGTGCCTACCTCGCTGTTATGACCGTTGTCTTCTTTTGGGCTGCTCATGCATCTGATTTCTTCTCGGACAAATTTGGCGTGAGATCTATCAGGAACAGCCACAATGAGCTTACAGCAGCTGTTTACCTTCAAGTGAGTATTGTAAGTCAGGCTCTCATCTTTGTTACAAGGTCAAGGAGCTGGTCTTTTGTTGAACGTCCCGGCCTCTTTCTTGTTGTTGCCTTTGTCTTAGCACAGCTGATTGCCACCCTCATAGCTGTGTATGCAAATTGGGGCTTTGCAAAAATGAAAGGGATTGGATGGGGTTGGGCTGGTGTCATTTGGCTCTACAGCATTATTTTCTACATACCCCTGGATGTAATTAAGTTCATGATCCGATATGCATTAACTGGCAAGGCATGGAATAATATAACTGAGAACCGGGTTGCTTTCACCTCAAAGAAAGATTAtggaaagggagagagagaagcaCAATGGGCTGCAGCTCAACGCACATTACATGGCCTGAATCCACCTGAAACGGAGGAAATCTTGAATGAAAAGAACAACTACAGGGAATTGTCTGAGCTTGCAGAACAGGCCAAGAAACGTGCTGAAGTTGCAAGGCTAAGGGAGCTTCACACACTGAAGGGGCATGTTGAGTCTGTTGTGAAACTCAAGGGACTTGACATTGAGACAATTCAGCAGCACTACACCGTTTGA 2553 0.4646 MVLLIVNSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWTEQEASILVPGDIISIKLGDIIPADARLLDGDALKIDQSALTGESLPVSKHPGDEVFSGSTVKQGELEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIALGMIIEIVVMYPIQHRKYRSGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLVEVFARDADKDTVILLGARASRVENQDAIDACIVGMLGDPKEARDGITEVHFLPFNPVDKRTAITYVDTEGNWHRVSKGAPEQIIELCNLREEVKKKAHSIIDKFADRGLRSLAVAKQEVPERNKESAGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGEHKDESIAGLPVDELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLREIFTTGVVLGAYLAVMTVVFFWAAHASDFFSDKFGVRSIRNSHNELTAAVYLQVSIVSQALIFVTRSRSWSFVERPGLFLVVAFVLAQLIATLIAVYANWGFAKMKGIGWGWAGVIWLYSIIFYIPLDVIKFMIRYALTGKAWNNITENRVAFTSKKDYGKGEREAQWAAAQRTLHGLNPPETEEILNEKNNYRELSELAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0068 850 SFLD p-type atpase 210 539 IPR044492 -
Ssu8g0068 850 Gene3D - 1 714 - -
Ssu8g0068 850 SUPERFAMILY Calcium ATPase, transduction domain A 31 128 IPR008250 -
Ssu8g0068 850 PANTHER CALCIUM-TRANSPORTING ATPASE 1 831 - -
Ssu8g0068 850 Gene3D - 799 850 - -
Ssu8g0068 850 CDD P-type_ATPase_H 1 740 IPR006534 GO:0008553|GO:0016021|GO:0120029
Ssu8g0068 850 Gene3D - 240 387 IPR023299 GO:0000166
Ssu8g0068 850 Gene3D - 225 524 IPR023214 -
Ssu8g0068 850 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 745 IPR023298 -
Ssu8g0068 850 Coils Coil 794 821 - -
Ssu8g0068 850 Pfam haloacid dehalogenase-like hydrolase 224 501 - -
Ssu8g0068 850 Gene3D - 31 115 - -
Ssu8g0068 850 SFLD C1.7: P-type atpase like 210 539 - -
Ssu8g0068 850 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 1 831 - -
Ssu8g0068 850 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 2 705 IPR006534 GO:0008553|GO:0016021|GO:0120029
Ssu8g0068 850 PRINTS P-type cation-transporting ATPase superfamily signature 510 522 - -
Ssu8g0068 850 PRINTS P-type cation-transporting ATPase superfamily signature 404 414 - -
Ssu8g0068 850 PRINTS P-type cation-transporting ATPase superfamily signature 78 92 - -
Ssu8g0068 850 PRINTS P-type cation-transporting ATPase superfamily signature 382 393 - -
Ssu8g0068 850 PRINTS P-type cation-transporting ATPase superfamily signature 228 242 - -
Ssu8g0068 850 PRINTS P-type cation-transporting ATPase superfamily signature 487 506 - -
Ssu8g0068 850 SUPERFAMILY HAD-like 224 534 IPR036412 -
Ssu8g0068 850 Pfam E1-E2 ATPase 30 207 - -
Ssu8g0068 850 ProSitePatterns E1-E2 ATPases phosphorylation site. 230 236 IPR018303 -
Ssu8g0068 850 PRINTS H+-transporting ATPase (proton pump) signature 459 475 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g0068 850 PRINTS H+-transporting ATPase (proton pump) signature 344 362 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g0068 850 PRINTS H+-transporting ATPase (proton pump) signature 659 680 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g0068 850 PRINTS H+-transporting ATPase (proton pump) signature 518 543 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g0068 850 PRINTS H+-transporting ATPase (proton pump) signature 487 503 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g0068 850 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 462 573 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g0068 850 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 2 250 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0068 Ssu-Chr8 1133106 1137022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0068 1 850 Primary Pumps ATPases AT3G42640 84.588 0.0 1472
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0068 K01535 - gmx:100782329 1565.44