Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0067 ATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCACTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTTTTGAAGACTAGAATATGGCTAGGAACATTTGAAACGGCAGAAGATGCAGCTAGAGCGTACGATGAAGCTGCAAGGTTGATGTGCGGGCCAAAAGCACGCACCAATTTCGCTTACAATCCCAGTGAGCCACAGTCATCTTCGTCGAAGCTTCTCTCTGCTACTCTGACCGCGAAGCTACACAAGTGTCACATGGCCTCTCTTTCCCTTCAAATGACCAAGCAGAAGCAAACACAGAGAGAGGCTCAAGGATCATCCAACTCAGGCAGCAATGACATTGCGGGAACAAGTGCGGACACGGGCTTTAGATGGCCAGAGAAGAGACACGAGGAAATGCAGTGGCTAGAAGGGCATTGGGTTGGCGAGGAAAGCCAAGTTGAAGTGGCAGAACAGCAGCCAGTTCTTGAAGATGATCACATTGAACAGATGATTCAGGAGCTGCTTGATTATGGGTCAATGGAGCTTAGTTCTGTTGACTCGGCCTAA 564 0.5071 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFAYNPSEPQSSSSKLLSATLTAKLHKCHMASLSLQMTKQKQTQREAQGSSNSGSNDIAGTSADTGFRWPEKRHEEMQWLEGHWVGEESQVEVAEQQPVLEDDHIEQMIQELLDYGSMELSSVDSA 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0067 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Ssu8g0067 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Ssu8g0067 187 MobiDBLite consensus disorder prediction 98 129 - -
Ssu8g0067 187 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Ssu8g0067 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 183 - -
Ssu8g0067 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Ssu8g0067 187 MobiDBLite consensus disorder prediction 98 123 - -
Ssu8g0067 187 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Ssu8g0067 187 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677
Ssu8g0067 187 PANTHER ETHYLENE RESPONSE FACTOR 1 183 - -
Ssu8g0067 187 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Ssu8g0067 187 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0067 Ssu-Chr8 1125762 1126542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0067 1 184 AP2-EREBP Transcription Factor Family AT5G25190 61.957 7.31e-72 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu8g0067 AP2 7.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0067 - - gmx:100777851 291.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0067 8 1125762 1126542 Ssu8g0067 8 1125762 1126542 ECH