Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0066 ATGGACCTTCTATGGCCAGAGCCACGTCCATATGAAAATCTGAACATCCCATTTTCAGAGACTCCATCATGCTCAAAGCCAGTTGTACCTTCCATGGATACTcaaaaggagaaggaagaaagaaaacacCCCCATGAGTCAGCTTCACACCTTCTACTGGATCTAAGTCTCCCTGGTAAAGATTCAGGTGATGAGTCAAAGCCAGAACTCAATCTCATCAACTGCATCGATACAAATTTGTCCATGAACTCCTCAGAATCTAGTCATGGACATGATGATGAATTGGAGCCCCGGATATTCTCATGCAACTACTGCCAAAGAAAGTTTTATAGTTCGCAGGCACTTGGGGGACACCAGAATGCACATAAGCGTGAAAGAACTTTGGCAAAAAGAGGACACAAAGCTGGTGCTGCAGTTTCAATAGATTTTGGACAAAAGTACTCCAGTATGGCTTCTCTACCTTTGCATGGCTCCTATAACAGGTCACTTGGTATTCAGGCGCATTCTATGATCAACAAACCCTCTTATCAAACACCCTTTTTTGGTTTGTCCCGTTCCCATGCTCAAAATGGGTGGCAGAAGCGGCCTATACATTCACAACCGGCAATTGGGAACCTTCATGCTGGGACAGAAACTGAATCATCCTTGGCTGGTGGAATCCCACGGATAGGGAACTTGTCTCCAAGGCTGGTGCCAGAGGGATTTGGAGGTTACTGGTTGGATAGTATTACCCATTTGAAGACTAAACAAGAGGAGTTGCAGAAGCTTGACTTGTCCCTCAAACTCTAA 789 0.4373 MDLLWPEPRPYENLNIPFSETPSCSKPVVPSMDTQKEKEERKHPHESASHLLLDLSLPGKDSGDESKPELNLINCIDTNLSMNSSESSHGHDDELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKAGAAVSIDFGQKYSSMASLPLHGSYNRSLGIQAHSMINKPSYQTPFFGLSRSHAQNGWQKRPIHSQPAIGNLHAGTETESSLAGGIPRIGNLSPRLVPEGFGGYWLDSITHLKTKQEELQKLDLSLKL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0066 262 SUPERFAMILY beta-beta-alpha zinc fingers 97 127 IPR036236 -
Ssu8g0066 262 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 33 262 IPR044246 GO:0009788
Ssu8g0066 262 Gene3D Classic Zinc Finger 78 151 - -
Ssu8g0066 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Ssu8g0066 262 MobiDBLite consensus disorder prediction 1 69 - -
Ssu8g0066 262 MobiDBLite consensus disorder prediction 32 49 - -
Ssu8g0066 262 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 33 262 - -
Ssu8g0066 262 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Ssu8g0066 262 MobiDBLite consensus disorder prediction 16 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0066 Ssu-Chr8 1096654 1097442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0066 15 262 C2H2 Transcription Factor Family AT5G10970 42.164 9.33e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu8g0066 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0066 - - gmx:100812573 421.394