Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0064 ATGGACAATAACGAGGAAATTCCATCAACACCTGCAACGCCAGGCACTCCTGGTGCACCTCTTTTTGGTGGGGGGTtcaataataataggaataataagTCCCTACTCAAGAGTTGTAGGTGCTTCAGTGTGGAGGAATGGAGCTTAGAAGATGGAGGCTTACCAGCGGTGTCATGTTCATTGCCAGCCCCTCCTCCAGTCCCTCTTGCAAGAAAGGTTGGAGCGGAGTTCGTAGGGACATTCATTCTCATGTTTGCTGGCACTGCCGCTGCTATTGTGAACCAAAAGACAAACGGGTCTGAGACCCTTATTGGATGTGCTGCCACTACTGGTCTTGCCGTTATGATCGTCATCCTCGCCACTGGCCACATATCCGGTGCTCATCTCAACCCTGCTGTCACCATTTCCTTTGCTGCATTAAAGCACTTCCCGTGGAAGCATGTGCCTATGTATATTGGTGCACAAGTTTTGGCATCTATATGTGCCTCATTTGCTCTCAAGGGGGTTTATCACCCTTTCATGAGTGGGGGAGTCACCGTTCCTTCCGGAGGATATGGCCAAGCTTTCGCTTTAGAGTTCATTATTGGTTTCAATCTCATGTTCGTTGTCACTGGAGTAGCCACCGACACCAGAGCTGTGGGAGAACTTGCGGGAATCGCGGTGGGAGCGACTGTAATGCTCAATATACTCATAGCAGGGCCAGTATCAGGGGGCTCAATGAACCCAGTAAGAACACTAGGTCCTGCTATTGCCGCAAACAACTACAAAGCCATATGGGTCTATCTAGTAGCTCCCATACTTGGAGCTTTAGGTGGGGCAGGTACCTACACTGCAGTCAAGCTGCCTGAAGAAGATGATGACACCAAGGCAAAGGCTTCAATCAGCTTCAGAAGGTGA 897 0.4894 MDNNEEIPSTPATPGTPGAPLFGGGFNNNRNNKSLLKSCRCFSVEEWSLEDGGLPAVSCSLPAPPPVPLARKVGAEFVGTFILMFAGTAAAIVNQKTNGSETLIGCAATTGLAVMIVILATGHISGAHLNPAVTISFAALKHFPWKHVPMYIGAQVLASICASFALKGVYHPFMSGGVTVPSGGYGQAFALEFIIGFNLMFVVTGVATDTRAVGELAGIAVGATVMLNILIAGPVSGGSMNPVRTLGPAIAANNYKAIWVYLVAPILGALGGAGTYTAVKLPEEDDDTKAKASISFRR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0064 298 MobiDBLite consensus disorder prediction 1 24 - -
Ssu8g0064 298 PRINTS Major intrinsic protein family signature 110 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0064 298 PRINTS Major intrinsic protein family signature 147 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0064 298 PRINTS Major intrinsic protein family signature 222 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0064 298 PRINTS Major intrinsic protein family signature 259 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0064 298 PRINTS Major intrinsic protein family signature 71 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0064 298 PRINTS Major intrinsic protein family signature 191 209 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0064 298 ProSitePatterns MIP family signature. 128 136 IPR022357 -
Ssu8g0064 298 Gene3D Glycerol uptake facilitator protein. 65 291 IPR023271 -
Ssu8g0064 298 Pfam Major intrinsic protein 69 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0064 298 CDD MIP 71 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu8g0064 298 PANTHER BNAA02G36290D PROTEIN 6 292 - -
Ssu8g0064 298 PANTHER AQUAPORIN NIP2-1 6 292 IPR034294 -
Ssu8g0064 298 SUPERFAMILY Aquaporin-like 68 285 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0064 Ssu-Chr8 1069792 1074964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0064 3 298 Major Intrinsic Protein MIP AT1G80760 76.873 1.85e-162 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0064 K09874 - gmx:100815637 519.62