Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0062 ATGCCTTCTGCAGAATCATCCTCCCAGACCCAGACCCAGACCCAGACCATATGTGTCACCGGCGCTGGTGGCTTCATCGCATCTTGGATGGTCAAACTCCTCTTGGAGAAAGGCTACACTGTCCGAGGCACCCTCAGAAATCCAGATGATCCCAAGAACACGCACTTGAAAGAGTTTGAAGGAGCCGCCCAGAGGCTAACTCTGCACAAGGTTGATCTCCTTGATCTTGACTCCGTTAGATCAGTCATTCACGGCTGTGATGGTGTCTTTCACACCGCTTCTCCAGTCACCGATAACCCCGAAGAAATGGTGGAGCCAGCAGTGAATGGAGCCAAGAATGTGATCATAGCAGCTGCAGAAGCAAAAGTGCGACGCGTGGTGTTCACCTCGTCAATTGGCGCAGTCTATATGGACCCCAAAAGGAGTATCGATGTGGTGGTTGATGAGTCTTGTTGGAGTGATTTAGAACATTGCAAGAACACCAAGAACTGGTATTGCTATGGGAAAGCTGTGGCTGAACAAGCGGCATGGGATACGGCAAAAGAGAAGGGGGTGGACTTGGTTGTAGTGAACCCAGTTTTGGTTCTTGGGCCGTTATTGCAACCCACAATCAATGCTAGCACAATTCACATCCTCAAGTACCTCACTGGCTCTGCCAAGACCTATGCAAATGCCACACAGGCTTATGTGCACGTTAGGGATGTGGCATTGGCCCACATACTTGTTTATGAGAAGCCTTCTGCTTCTGGTAGATACTTATGTGCCGAAAGCTCCCTGCACCGTGGAGAACTAGTTGAAATTCTGGCCAAGTATTTCCCGGAGTACCCAGTTCCCACCAAGTGTTCAGATGAAAAGAATCCGAGAGCAAAAccctacatttttaaaaatcaaaagctGAAAGATTTGGGATTGGAATTCACTCCGGTGAGTCAGTGTCTATATGAAACCGTGAAGAGCCTGCAGGAGAAAGGCCACCTTCCTATTCCTGCAAAGCAGGAAGATTCGACTACAGTGAAATCCTAA 1023 0.479 MPSAESSSQTQTQTQTICVTGAGGFIASWMVKLLLEKGYTVRGTLRNPDDPKNTHLKEFEGAAQRLTLHKVDLLDLDSVRSVIHGCDGVFHTASPVTDNPEEMVEPAVNGAKNVIIAAAEAKVRRVVFTSSIGAVYMDPKRSIDVVVDESCWSDLEHCKNTKNWYCYGKAVAEQAAWDTAKEKGVDLVVVNPVLVLGPLLQPTINASTIHILKYLTGSAKTYANATQAYVHVRDVALAHILVYEKPSASGRYLCAESSLHRGELVEILAKYFPEYPVPTKCSDEKNPRAKPYIFKNQKLKDLGLEFTPVSQCLYETVKSLQEKGHLPIPAKQEDSTTVKS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0062 340 CDD FR_SDR_e 18 304 - -
Ssu8g0062 340 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 9 330 - -
Ssu8g0062 340 Pfam NAD dependent epimerase/dehydratase family 17 248 IPR001509 -
Ssu8g0062 340 Gene3D - 6 340 - -
Ssu8g0062 340 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 9 330 - -
Ssu8g0062 340 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 12 321 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0062 Ssu-Chr8 1040405 1043962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0062 15 280 Monolignol Biosynthesis Gene Families AT1G80820 75.188 3.21e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0062 K09753 - gmx:100789070 617.461