Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0060 ATGGATCGGCGATCGAAGGGCGGCGGCGCCCGGAACATCCTCTTCAACAAGTACGAGATAGGGAAACTGCTGGGACAGGGGAACTTCGCGAAGGTGTACCACGGCAGAAACCTCGGCACAAACGAGAGCGTGGCCATCAAGGTTATCAAAAAAGAGAGGCTCCACCAGAAAGAGAGGCTCGTGAAACAGATAAAACGCGAGGTGTCTGTCATGCGGCTGGTGCGTCACCCCCACATCGTGGAGCTGAAAGAAGTGATGGCCAACAAGGCCAAGATCTTCATGGTGGTGGAATACGTCAAGGGGGGTGAACTCTTCGCCAAGGTCGCGAAAGGGAAGATGAAAGAGGACGTGGCCAGAAAGTACTTCCAGCAACTCATCAGCGCTGTCGACTTCTGCCACAGCCGCGGCGTCACGCACCGCGATTTGAAGCCGGAGAACCTGCTCCTCGACGAGAACGAAGACCTTAAGGTCTCCGACTTCGGGTTGTCGGCGTTGCCGGACCAGCGCAGATCCGACGGGATGCTCCTCACGCCGTGCGGCACGCCGGCTTACGTGGCGCCGGAGGTGCTGAAGAAAAAGGGCTACGATGGGTCCAAGGCTGATATATGGTCCTGCGGTGTCATCCTCTACGCTTTGCTTTCTGGGTATCTTCCCTTCCAGGGTGAGAATGTCATGAGGATTTATAGTAAATCTTTCAAAGCGGATTACGCGCTCCCCGAATGGATTTCCCCTCAGGCGAAAAACTTGATCTCTAATTTACTCGTTGTGGACCCGCAAAAGAGGTACTCCATCCCTGATATAACGAAGCACCCTTGGTTTCAGATTGGGTTCATGAGGCCCATTGCGTTTTCTATGAAGGAGACGGCCCTCGAAGATAACATTGATTTCAACGgggatgataatgatgatggtcacaataacaacaacaataacaataataataacaataaattggCGGGGGCTAAGCACGCTCGTCCCTCGTACAACGCTTTTGAGATAATTTCGTCCTTGTCGCACGGATTTGATCTTAGGAATTTGTTTGAGACGAGGAAGAGGTCTCCCTCCATGTTTATTTCCAAGTTCTCGGCGTCGGCGGTGCTGGCGAAGCTGGAGGCGGTGGCGAAGAAGCTGGAGTTTAAGGTGACGGGGAAGAAGGAGTTCATGGTCAGGATGCAGGGGGCGACCGAAGGGAGGAAGGGGAAGCTGGCGATGACGGTGGAGGTGTTCGAGGTGGCGCCGGAGGTGGCGGTGGTCGAGTTCTCTAAGTCCGCCGGAGACACGCTTGAATACATCAAGTTCTGCGAGGACCAGGTCAGACCTTCCCTCCAAGACATTGTCTGGAGTTGGCAGGGGGACAGTAATGGCCACCATTCAGCCTAA 1380 0.5239 MDRRSKGGGARNILFNKYEIGKLLGQGNFAKVYHGRNLGTNESVAIKVIKKERLHQKERLVKQIKREVSVMRLVRHPHIVELKEVMANKAKIFMVVEYVKGGELFAKVAKGKMKEDVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPDQRRSDGMLLTPCGTPAYVAPEVLKKKGYDGSKADIWSCGVILYALLSGYLPFQGENVMRIYSKSFKADYALPEWISPQAKNLISNLLVVDPQKRYSIPDITKHPWFQIGFMRPIAFSMKETALEDNIDFNGDDNDDGHNNNNNNNNNNNKLAGAKHARPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKFSASAVLAKLEAVAKKLEFKVTGKKEFMVRMQGATEGRKGKLAMTVEVFEVAPEVAVVEFSKSAGDTLEYIKFCEDQVRPSLQDIVWSWQGDSNGHHSA 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0060 459 PANTHER - 10 456 - -
Ssu8g0060 459 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0060 459 Gene3D Transferase(Phosphotransferase) domain 1 99 276 - -
Ssu8g0060 459 CDD CIPK_C 329 443 - -
Ssu8g0060 459 Pfam Protein kinase domain 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0060 459 SMART serkin_6 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0060 459 Gene3D Kinase associated domain 1, KA1 324 448 - -
Ssu8g0060 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Ssu8g0060 459 ProSiteProfiles NAF domain profile. 323 348 IPR018451 GO:0007165
Ssu8g0060 459 MobiDBLite consensus disorder prediction 294 320 - -
Ssu8g0060 459 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Ssu8g0060 459 Gene3D Phosphorylase Kinase; domain 1 10 98 - -
Ssu8g0060 459 Pfam NAF domain 327 382 IPR004041 GO:0007165
Ssu8g0060 459 SUPERFAMILY Protein kinase-like (PK-like) 14 274 IPR011009 -
Ssu8g0060 459 PANTHER CBL-INTERACTING PROTEIN KINASE 16 10 456 - -
Ssu8g0060 459 MobiDBLite consensus disorder prediction 303 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0060 Ssu-Chr8 997232 998611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0060 11 458 CBL-interacting serine-threonine protein kinases AT5G10930 59.375 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu8g0060 Pkinase 2.8e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0060 - - gmx:100804244 757.673