Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0058 ATGGATTATTCATCATGGATTAACACTTCCTTGGATCTCAACATTAATCCCCACAGGTTTCATGAAGAAGTTCCCAAAAAGGAGgtggaaaacaattttttctcaCCGGGGATGAAGAAATCTTCTGTAAAAGAAGAGTCCGCTGGTGCCTTGGTGGAGGAGCTGAAGCGGGTGGGTGCAGAAAACAAGAAGTTGACCGAAATGCTCACAGAGATGTGTGAGAACTACAACGCTTTGCGAAATAATTTGATGGAATATATGAGGAAGAATCCTGAAAAGGAGCTCAGCTCATCGAAGAAAAGAAAGTCCGAAAGCAGCAACAACAATAGTGTTCCAACGGGAGCCAACGGAAACTCTGAAAGCAGCTCAACTGATGAAGAATCATGCAAGAAACCAAAGGAAGACACCAAggcaaaaatttcaagagtttaTGTGAGAACAGAAGCGTCTGATACAGGCCTTATTGTGAAAGATGGTTATCAATGGAGGAAATATGGACAAAAGGTGACCAGGGATAACCCTTCTCCAAGAGCATACTTCAAGTGCTCTTTTGCTCCAAGCTGTCCAGTCAAAAAGAAGGTGCAAAGAAGTGTTGATGATCAATCCGTTCTGGTTGCAACTTATGAAGGAGAGCACAATCATCCCCACCCTTCTCAAATGGAGGTAACAAAAGGCTCCAGCCGTTGTATGACCCTAGGTTCAGTACCCTGTTCAGCGTCTCTTAGCTCTTCCGCGCCAGCAGTTACCCTTGACTGGACAAAATCCAAGTCCAGCAGCGAGTCTAAGAATATAAATCCCAAAATCGATTCACCAGAAGTCCCGCGGGTTTTGGTAGAACAGATGGCTACTTCCTTGACCAAGGATCCTAATTTCAGAGCAGCTCTAGTTGCCGCCATCTCAGGAAAAATGTTGCACAATAATTAA 924 0.4264 MDYSSWINTSLDLNINPHRFHEEVPKKEVENNFFSPGMKKSSVKEESAGALVEELKRVGAENKKLTEMLTEMCENYNALRNNLMEYMRKNPEKELSSSKKRKSESSNNNSVPTGANGNSESSSTDEESCKKPKEDTKAKISRVYVRTEASDTGLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSVDDQSVLVATYEGEHNHPHPSQMEVTKGSSRCMTLGSVPCSASLSSSAPAVTLDWTKSKSSSESKNINPKIDSPEVPRVLVEQMATSLTKDPNFRAALVAAISGKMLHNN 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0058 307 SUPERFAMILY WRKY DNA-binding domain 154 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu8g0058 307 Coils Coil 62 89 - -
Ssu8g0058 307 MobiDBLite consensus disorder prediction 102 123 - -
Ssu8g0058 307 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 307 IPR044810 GO:0003700
Ssu8g0058 307 SMART WRKY_cls 156 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g0058 307 MobiDBLite consensus disorder prediction 124 138 - -
Ssu8g0058 307 Pfam WRKY DNA -binding domain 157 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu8g0058 307 MobiDBLite consensus disorder prediction 91 138 - -
Ssu8g0058 307 Gene3D WRKY domain 139 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu8g0058 307 PANTHER TRANSCRIPTION FACTOR 1 307 - -
Ssu8g0058 307 ProSiteProfiles WRKY domain profile. 155 217 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0058 Ssu-Chr8 941685 943204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0058 4 307 WRKY Transcription Factor Family AT1G80840 53.797 9.31e-103 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu8g0058 WRKY 2.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0058 - - gmx:100798375 504.982