Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0054 ATGATTGTTGTGCTTGGATTTAATCAGAAGATTAATCGAGGAGTGCGGAGATCAAATGCCCAGATGACCCTTCCAGAAAAATTTGTCCTGGATTTTATTCCAGCTGTTGGAGCATGTCTTTCAATTGTAGACATCATTTTTCTGTGGAAGAAAGAACACAATAATCACTTTGTTGGATACCACAAATGGTTTTATAGCTGTTCTGAGTTGATGGTGTGGATAAATATCATTCTCTTCACAAAGCGTGCCAGCAGTCATTACATTGTCTTCAACCGTATCTTATGTTTCTGGTGGATTCTGAAAGCAATATTGGTGGTTTTCTATTTGGTTACAAAGTTTCCATCGTTGGAGGTTTCAGCATGCATCATGGAAAGCTTAGTTGTTCTCTTGAATATCTCATTTGGCATAGCTATCAATGTGATCAGGATAAAGATACCATCTTTCAAAAGCAGtttattggaAGATCCACTTCTTTCAAATGGCATGGACCTTGAGGAAGGTGGCTATCATGACCTTGGAAATAATGGAAACTTTTGGGATTTGATGACTTTCAAATTCATAACTCCAGTAATGAATCATGGTCTGGTAAAGCAATTAGACTCTGAAGATCTGTTGCCGCTACCTACTGATTTGGGTCCTTCCTCCTGTCATGAAGTGATTTTATCCTGCTGGCAAGCTCAACTGAGTAACAATGGTTCAAACCCATCTTTGTTTAGAGCACTCTGTAGTGCATATGGATGGCCATATCTCCGCCTGGGTTTATTGAAGGTGATTAATGATTGTATTGGTTTTGCGGGACCATTGCTTCTCAATAAGCTGATCCAGTTTCTTCAGCAAGGTTCAGTGAATTTGGATGGGTATTTACTTGCATTATCCCTGGGACTCACCTCTATAATTAAATCCTTTTTAGATACACAATATACTTTTCATCTTTCCAAACTGAAGCTGAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAgTGTCTACATGTGAACTTAGCAGAGCGTTCAAAATTCACAAATGGTGAAATTCAGACATTTATGTCAGTGGATGCTGACCGAACTGTCAACTTGTGTAATAGTTTCCATGATATGTGGAGCCTGCCTTTACAAATTGGAGTGGCGCTTTATCTTTTGTATACTCAAGTCAAATTTGCATTTGTATCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATATCAACGTTGATTGCAAGTGCTACTGAGCAAATGATGAAGGAGAAAGATGAAAGGATTCGTAGGACAGGAGAACTTTTGACTCATATTCGCACTTTGAAGATGTATGGATGGGAACTTCTTTTTACTAGTTGGTTGATGGATACAAGATGTTTGGAAGTCAAACACTTAGCTACTCGGAAGTACTTGGATGCATGGTGTGTTTTCTTTTGGGCTACAACACCAacactcttttctcttttcacaTTTGGACTCTTTGCATTGATGGGACATCAACTTGATGCTGCAATgGTTTTCACTTGTCTTGCGTTGTTTAACACACTGATTTCACCGCTAAACTCATTCCCTTGGGTAATTAATGGATTGATTGATGCCATCATATCTTCCAGACGTTTGAGTAGGTTTCTCTCTTGTCCTGAACATAAATTTAAAGAGGGAGAGACAAATTCCTGTCCATCATTCCTGTGTAAACAGCCTGATTCTGTACAAGGTTTGGCTGTCTTTATCCAAGATGTATGTTGTACTTGGTCAAGCAGTGAGGAAGAAGCATTAAATTTGGTGTTGAATCATGTGACTCTAAGCGTGTCCCAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCAGGTAAATCATCCCTGTTGTATTCAATTCTTGGAGAAATGCGGCTTGCTCGTGGCTCTATCTATTCCAATGAATCCATTGCTTATGTACCACAGGTCCCTTGGATTTTATCTGGAACGGTGCGTGACAACATATTATTTGGGAAAAGCTATGATCCTGAAAGGTATACAGATACACTGCAGGCATGTGCATTAGATGTTGATGTCTCATTGATGGTTGGAGGCGACATGGCTTATATCGGAGAGAGAGGAGTCAACTTATCGGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCAATGTATCGTGACTCAGATGTTGTTATGCTTGACGATGTCCTGAGTGCAGTTGATGTACAAGTTGCTCAATGTATCTTACACAATACCATTCTAGGTCCTCTTATGCAAAGAAAAACTCGATTGCTCTGTACCCACAACATTCAGGCAATATCTTCTTCTGATATGATTGTTGTAATGGACAAGGGACACATAAAGTGGATGGGAAGATCAGCTGACTTTCCAATTTCTTCATATACAGCATTCTCTCcattgaatgaaattgattcaGCTTTACAGAGTCATAGACAATCTTGCAGCACAAATCTTTCTTCCAAATCCAAGGAGCAGTCTCTTCCTGATACAGTTATTATGCATGCTCTGGAGGGAGCAGAGGAGATAGTTGAAGTTGAGTTGAGGAAAGAGGGAAAAGTTGAACTTGGAGTGTATAAGAATTATGCTGTCTTCACTGGCTGGTTCATCACAATCATTATATGCCTATCAGCTATTATGATGCAAGCTTCTCGTAATGGAAATGATTTATGGCTATCATATTGGGTTGATACAACAGAAAGCAGTCAAACAAGATATTCTGTGTCTTTCTATCTGGCTATACTATGTCTCTTTTGTATTATGAATTCCTTTTTCACATTGGTGAGGGCATTCTCTTTTGCATTTGGTGGGTTACAAGCAGCAACTAAGGTACACAATAAATTGCTCAACAAGCTTATCAATGCACCTGTGCAATTCTTTGATCGGACCCCAGGTGGGAGAATACTGAACAGGTTATCTTCAGATCTTTATACAATTGATGATTCTCTTCCATTCATTATGAACATTGTCCTAGCTAATTTTGTAGGCTTGTTGGGTATTGCAATAATTTTGTGTTATGTACAGGTCTTCTTCTTACTCTTGCTATTACCATTTTGGTACATCTACAGTAGACTTCAGTTCTTCTACAGGTCAACATCAAGAGAATTACGAAGACTGGACAGTGTTTCTCGTTCTCCAATATACACATCTTTCACTGAAACACTTGATGGATCATCAACTATTAGGGCGTTTAAATCTGAGGACTTTTTCTTTGCCAAATTCACTGAACATATAACCTTGTATCAGAAGACTTCCTACACAGAGATAGTGGCAAGTTTGTGGCTTTCCTTGCGTCTTCAGTTATTAGCTGCATTTATCATCTCATTCATAGCTGTGATGGCTGTTGTTGGATCTCATGGCACTCTGCCTATCAACTTTGGTACCCCAGGACTGGTAGGATTGGCCCTCTCATATGCAGCTCCAATTGTGTCCTTGTTGGGGAGTTTTTTATCAAGTTTCACTGAAACAGAAAAGGAAATGGTTTCAGTTGAAAGGGCCCTTCAATACATGGACATTCCTCAAGAAGAACAAACTGGATGCCTATACTTGAGTCCAGATTGGCCAAATCAAGGAGTTATCGAATTCCAGTATGTTACTTTGAAATATATGCCGTCTTTGCCAGCTGCACTCTGCAATCTTAGTTTTAGAATTGCAGGAGGGACACAAGTTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATGCCCTTTTCCGCCTTACCCCAATATGTACAGGCTCCATCACAATTGATGGTgtggatattaaaaatgttcCTGTCGGAGAACTACGTACACATTTGGCTATTGTTCCTCAAAGTCCATTTTTGTTTGAAGGATCATTACGGGATAACCTAGATCCATTCAAAATGaatgatgacttaaaaatttgGAATGCGTTGGAGAAGTGCCATGTGAAAGAGGAAGTAGAAGTAGCTGGAGGGCTGGATGTTCTTGTAAAGGAATCCGGGATGTCATTTTCAGTTGGCCAGCAGCAGCTTCTTTGCCTCGCACGTGCACTTCTGAAATCTTCGAAGGTTCTGTGTTTGGATGAATGCACGGCCAATGTAGACATTCAAACTGCTTCGCTGCTGCAAAATACCATATCCAGTGAATGCCAAGGAATGACAGTGCTCACAATTGCTCACAGGATTTCAACTGTTATAAATATGGACAGCATTCTGATTCTTGACAATGGGAAGCtgGCTGAACAGGGAAATCCGCAGGTTCTTCTGAAAGATGACACCTCTATATTTTCTAGTTTTGTTAGAGCTTCAGCAATGTAA 4281 0.3922 MIVVLGFNQKINRGVRRSNAQMTLPEKFVLDFIPAVGACLSIVDIIFLWKKEHNNHFVGYHKWFYSCSELMVWINIILFTKRASSHYIVFNRILCFWWILKAILVVFYLVTKFPSLEVSACIMESLVVLLNISFGIAINVIRIKIPSFKSSLLEDPLLSNGMDLEEGGYHDLGNNGNFWDLMTFKFITPVMNHGLVKQLDSEDLLPLPTDLGPSSCHEVILSCWQAQLSNNGSNPSLFRALCSAYGWPYLRLGLLKVINDCIGFAGPLLLNKLIQFLQQGSVNLDGYLLALSLGLTSIIKSFLDTQYTFHLSKLKLKLRSSIMTLIYEKCLHVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDMWSLPLQIGVALYLLYTQVKFAFVSGLAITILLIPVNKWISTLIASATEQMMKEKDERIRRTGELLTHIRTLKMYGWELLFTSWLMDTRCLEVKHLATRKYLDAWCVFFWATTPTLFSLFTFGLFALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHKFKEGETNSCPSFLCKQPDSVQGLAVFIQDVCCTWSSSEEEALNLVLNHVTLSVSQGSFVAVIGEVGSGKSSLLYSILGEMRLARGSIYSNESIAYVPQVPWILSGTVRDNILFGKSYDPERYTDTLQACALDVDVSLMVGGDMAYIGERGVNLSGGQRARLALARAMYRDSDVVMLDDVLSAVDVQVAQCILHNTILGPLMQRKTRLLCTHNIQAISSSDMIVVMDKGHIKWMGRSADFPISSYTAFSPLNEIDSALQSHRQSCSTNLSSKSKEQSLPDTVIMHALEGAEEIVEVELRKEGKVELGVYKNYAVFTGWFITIIICLSAIMMQASRNGNDLWLSYWVDTTESSQTRYSVSFYLAILCLFCIMNSFFTLVRAFSFAFGGLQAATKVHNKLLNKLINAPVQFFDRTPGGRILNRLSSDLYTIDDSLPFIMNIVLANFVGLLGIAIILCYVQVFFLLLLLPFWYIYSRLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFAKFTEHITLYQKTSYTEIVASLWLSLRLQLLAAFIISFIAVMAVVGSHGTLPINFGTPGLVGLALSYAAPIVSLLGSFLSSFTETEKEMVSVERALQYMDIPQEEQTGCLYLSPDWPNQGVIEFQYVTLKYMPSLPAALCNLSFRIAGGTQVGIIGRTGAGKSSVLNALFRLTPICTGSITIDGVDIKNVPVGELRTHLAIVPQSPFLFEGSLRDNLDPFKMNDDLKIWNALEKCHVKEEVEVAGGLDVLVKESGMSFSVGQQQLLCLARALLKSSKVLCLDECTANVDIQTASLLQNTISSECQGMTVLTIAHRISTVINMDSILILDNGKLAEQGNPQVLLKDDTSIFSSFVRASAM 1426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0054 1426 CDD ABCC_MRP_domain2 1187 1406 - -
Ssu8g0054 1426 SUPERFAMILY ABC transporter transmembrane region 240 545 IPR036640 GO:0005524|GO:0016021
Ssu8g0054 1426 Pfam ABC transporter transmembrane region 253 517 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g0054 1426 Pfam ABC transporter transmembrane region 868 1114 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g0054 1426 ProSitePatterns ABC transporters family signature. 1325 1339 IPR017871 GO:0005524
Ssu8g0054 1426 Pfam ABC transporter 1207 1353 IPR003439 GO:0005524
Ssu8g0054 1426 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 254 529 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g0054 1426 Pfam ABC transporter 593 725 IPR003439 GO:0005524
Ssu8g0054 1426 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 868 1154 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu8g0054 1426 Gene3D - 561 816 IPR027417 -
Ssu8g0054 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1183 1414 IPR027417 -
Ssu8g0054 1426 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1189 1422 IPR003439 GO:0005524
Ssu8g0054 1426 CDD ABC_6TM_MRP7_D2_like 867 1166 - -
Ssu8g0054 1426 ProSitePatterns ABC transporters family signature. 700 714 IPR017871 GO:0005524
Ssu8g0054 1426 Gene3D ABC transporter type 1, transmembrane domain 226 547 IPR036640 GO:0005524|GO:0016021
Ssu8g0054 1426 Gene3D ABC transporter type 1, transmembrane domain 835 1173 IPR036640 GO:0005524|GO:0016021
Ssu8g0054 1426 PANTHER MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7 231 1406 - -
Ssu8g0054 1426 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 572 799 IPR003439 GO:0005524
Ssu8g0054 1426 CDD ABC_6TM_MRP7_D1_like 252 537 - -
Ssu8g0054 1426 CDD ABCC_MRP_domain1 574 775 - -
Ssu8g0054 1426 Gene3D - 1176 1423 IPR027417 -
Ssu8g0054 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 572 785 IPR027417 -
Ssu8g0054 1426 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 231 1406 - -
Ssu8g0054 1426 SUPERFAMILY ABC transporter transmembrane region 864 1171 IPR036640 GO:0005524|GO:0016021
Ssu8g0054 1426 SMART AAA_5 1215 1399 IPR003593 -
Ssu8g0054 1426 SMART AAA_5 602 776 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0054 Ssu-Chr8 889418 909052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0054 565 828 Calmodulin-binding Proteins AT2G36910 25.806 2.74e-18 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0054 K05674 - gmx:100814181 2571.19