Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0050 ATGCCTTCAAGACCCTTCCCTCCCACAAATCCCACCAAAACCAAGGCACTCTTCCTAGCACTCACCATTTCAGCTTGTGTTGTGATTTTTTGCTCAATTCTTTACTTCCTCTACCATCTCTGGCATTCCCTTGTTCACAGAGCTAAGACCATCCCCTTTGATGCAAGTGCTCCATTGAAGCTCCAAAGGTTCTCATACAAAGATTTAAAGCAAGCCACCAATGGCTTTGACACTGCCAATGTCATTGGCAAAGGTGGCTCTGGCACTGTTTTCAGGGGAATACTAAAAGATGGCAAGTTGATTGCCATCAAGCGCCTGGACGCGTTGTCTTTGCAGTCAGAGAGAGAGTTTCAAAACGAGCTGCAGATTCTTGGAGGGTTAAGGTCACCATTTTTGGTGACCCTTTTGGGTTACTGTGTGGAAAAGAACAAGAGAGTGTTGGTGTATGAGTACATACCCAACAGAAGCTTGCAGGAGTCACTCTTTGGAGATGGGGGTTTGAGCTTGAGTTGGGAGAGCAGGTTTTGCATAATATTGGATGTTGCTAGAGCTTTGGAGTTCTTGCACCTTGGATGTGATCCTCCAGTGATCCATGGTGATATCAAGCCAAGCAATGTTCTGCTTGATGCTGAGTGGCGTGGGAAGATCTCTGACTTTGGATTGTCAAGGATTAAGGTGGAGGGTGAGTTTGGTGTGGACTTGTTTAGCCAGGAACTGGGGAGGAGCCAGGATCTATGGAAAAGCCAAGACCTTTCAGGTAATTTGACTGCAGAAACTCCTGCTATTGGTACTCCTGTTGAGAGTGTTAGTGAAGTAGACTTTGCTCTAGCTTTGCAAGCCTCGTCTTCATCCAAAAATAGTAGGACCTGCTTTAATGTTAAAGCTTTGAACTTGAATTCTTTGAATTATAATGCCAATATTGCCAGTGAAAGTGAAATTAGGTGTGTAAATGCAAAGGGTAAGGAAATTTCAGCTTTGGATAGGGATGATTGGAATGGtaagtttttttcttatgatGATGAGCTTTCTAGCATTGATTATAGTAAGGAGTTAACTGTTAATGCTTCTTCTTTGGTGGATGATGAGAAGGCAAATGGGAAACAATGGGGAAAGGACTGGTGGTGGAGACAGGATGGAAATGGAGAATTATGTAGTAAAGACTATGTTATGGAGTGGATAGGGAGTCAGATTTGTCCATCAAACCCTGATTGGGATGATGGTAAGAACAATGTTCACGAGAAAGTAGAGTTGGAAAATTCAAGTCCCAAGGATAAAGACCATGATGCAATTGCACCCCAACCACAGGTGTTTGGGATAGGACATACTACAGATAATGGGGTTGAGAAAAAAGAATCAAGGGGaaagaaaaatcacaaaaagAAGCACAGGAAGATGCAAGAGTGGTGGAGAGAAGAGCATCTTGCTGAATTAAGCAAGAAGACCAGTAAACTGAAAAATCTTCATACTAAGTGGAGGAAAGGCTTGAAGGTGCCCCATTTTGACTTGGGTAGAAGGTTTTATCTTTGCAGACGTAAGAAGTTTGGAGAGGAGGGTGAGAATGAGTGTGATCAAAATGGGGAGTTTAGCTTCAGAAGAGGTTGGAAGAAGAAAAGTACTCGTTCCATTGGAAGTGACATGTGGAGTGGAGATCTTTTCAGCCGCGAGCTCAGCAGCACAACTAGCATGAGAGGGACACTTTGTTATGTGGCACCTGAATATGGAGGGTGTGGGTTCTTAATGGAGAAAGCTGACATTTATAGTTTTGGagttttgattcttgtaattgTGTCAGGTAGAAGACCATTGCATGTTCTTGCATCACCCATGAAGCTAGAGAAAGCTAACTTAATAAGCTGGTGTAGACACTTGGCTCAAGCTGGTAACATTTTAGAACTAGTGGATGAGAGATTGAAAGAAGATTACAACAAGGACCAAGCAAGCCTGTGTATCAACTTGGCACTCACCTGCTTACAGAAAATTCCAGAGTTGCGGCCAGATATTGGGGATATTGTCAAGATTTTTAAGGGGGAGATGGACCTTCCACCACTTCCATTTGAGTTCTCCCCTTCTCCACCTTCCAAATTATACAGCAAATCAAGAAGAAAACAGAAGGGCACTGCAGAACAGATTTTGTAA 2136 0.4232 MPSRPFPPTNPTKTKALFLALTISACVVIFCSILYFLYHLWHSLVHRAKTIPFDASAPLKLQRFSYKDLKQATNGFDTANVIGKGGSGTVFRGILKDGKLIAIKRLDALSLQSEREFQNELQILGGLRSPFLVTLLGYCVEKNKRVLVYEYIPNRSLQESLFGDGGLSLSWESRFCIILDVARALEFLHLGCDPPVIHGDIKPSNVLLDAEWRGKISDFGLSRIKVEGEFGVDLFSQELGRSQDLWKSQDLSGNLTAETPAIGTPVESVSEVDFALALQASSSSKNSRTCFNVKALNLNSLNYNANIASESEIRCVNAKGKEISALDRDDWNGKFFSYDDELSSIDYSKELTVNASSLVDDEKANGKQWGKDWWWRQDGNGELCSKDYVMEWIGSQICPSNPDWDDGKNNVHEKVELENSSPKDKDHDAIAPQPQVFGIGHTTDNGVEKKESRGKKNHKKKHRKMQEWWREEHLAELSKKTSKLKNLHTKWRKGLKVPHFDLGRRFYLCRRKKFGEEGENECDQNGEFSFRRGWKKKSTRSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAQAGNILELVDERLKEDYNKDQASLCINLALTCLQKIPELRPDIGDIVKIFKGEMDLPPLPFEFSPSPPSKLYSKSRRKQKGTAEQIL 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0050 711 SUPERFAMILY Protein kinase-like (PK-like) 56 694 IPR011009 -
Ssu8g0050 711 SMART serkin_6 76 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0050 711 ProSitePatterns Protein kinases ATP-binding region signature. 82 104 IPR017441 GO:0005524
Ssu8g0050 711 MobiDBLite consensus disorder prediction 686 711 - -
Ssu8g0050 711 Pfam Protein kinase domain 78 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0050 711 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Ssu8g0050 711 ProSiteProfiles Protein kinase domain profile. 76 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0050 711 PANTHER OS07G0586332 PROTEIN 1 707 IPR044576 -
Ssu8g0050 711 PANTHER OS08G0275200 PROTEIN 1 707 - -
Ssu8g0050 711 MobiDBLite consensus disorder prediction 418 465 - -
Ssu8g0050 711 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Ssu8g0050 711 Gene3D Phosphorylase Kinase; domain 1 43 151 - -
Ssu8g0050 711 Gene3D Transferase(Phosphotransferase) domain 1 152 262 - -
Ssu8g0050 711 Gene3D Transferase(Phosphotransferase) domain 1 533 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0050 Ssu-Chr8 840399 842534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0050 542 672 Receptor kinase-like Gene Family AT3G58690 31.061 3.05e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Ssu8g0050 Pkinase 8.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0050 - - ccaj:109812677 1352.04