Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0048 ATGGCGGATCTCAAGGAGAGGCTACTACCACCAAAACCTGCATCAGCTATTAACGTAAGAGAGGCTGCCAATCGACCATCTGCCTCTGGAAGACAAGCTTTCCAAGGGGTGGATGTTCTGGGGCTAAAGAAGCGAGGCCAAGGTCTCCGATCGTGGATTCGTGTTGACACATCTGGAAACTCTCAGGCCATTGAGGTAGACAAGTTTACCATGATGCGACGTTGTGATCTACCTGCACGTGATCTTCGTCTACTTGATCCTCTTTTTGTCTACCCATCAACGATCCTTGGTAGGGAAAAAGCTATTGTTGTAAATCTAGAGCAGATACGGTGTATCATTACAGCAGATGAGGTTCTTCTCTTGAATTCCCTTGATAGTTATGTATTGCACTATGTAATGGAGCTACAACGACGGTTGACAACAACTGGGGTAGGGGAGGTTTGGCAATCAGACAGTTCTGACTTGAACCGACGGAGAGGAAGTAggaattttgaaaatgtatttagCACCTCTTCCCCTGATTATTTGCCTTTTGAGTTCAGGGCTCTTGAAGTTGCCCTGGAGGCGGCATGCACATTTCTTGATTCCCAGGCAGCGGAGTTAGAAATCGAGGCTTATCCGTTGTTGGATGAACTGACATCAAAGATCAGTACTCTAAATTTGGAACGTGTTCGTCGGTTGAAAAGCAGACTTGTTGCCTTGACCAGGAGGGTTCAGAAGGTTAGAGATGAAATAGAGCAGCTTATGGATGATGATGGTGATATGGCCGAAATGTATCTTACTGAGAAGAAAAGGCGGATGGAGTTGTCATTTTATGGAGATCAGTCTATGGTTGGATATAAATCAGTTGATGGTGCATCTATTTCTGCTCCAGTCTCTCCTGTTTCATCACCTCCTGATTCTCGGAAGCTTGAAAAGAGCTTCAGCATTGCTAGGAGTCGACATGAGAGCATGAGGAGTTCTGAAACTACTACGGAAAGTATAGAGGAGCTTGAGATGTTGCTGGAAGCATACTTTGTTGTCATTGACAGCACTCTAAACAAGTTGACATCGTTGAAAGAGTACATTGATGACACAGAAGATTTCATCAACATTCAACTGgATAATGTGCGTAATCAGCTTATCCAGTTTGAGCTTTTACTCACAACTGCCACGTTTGTGGTTGCTATCTTTGGAGTGGTAGCAGGAATATTTGggatgaattttgaaattgcatTATTTGAGGTCCCCTCTGCTTTCCAGTGGGTCCTTATAATAACAGGAGTTTGTGGAGTCTTCATATTTTCTGCATTTGTGTGGTTCTTCAAGTACAGAAGACTCATGCCCCTATAG 1332 0.4294 MADLKERLLPPKPASAINVREAANRPSASGRQAFQGVDVLGLKKRGQGLRSWIRVDTSGNSQAIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLHYVMELQRRLTTTGVGEVWQSDSSDLNRRRGSRNFENVFSTSSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKRRMELSFYGDQSMVGYKSVDGASISAPVSPVSSPPDSRKLEKSFSIARSRHESMRSSETTTESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIALFEVPSAFQWVLIITGVCGVFIFSAFVWFFKYRRLMPL 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0048 443 Gene3D Magnesium transport protein CorA, transmembrane region 130 374 - -
Ssu8g0048 443 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 3 443 IPR039204 -
Ssu8g0048 443 Gene3D Magnesium transport protein CorA, transmembrane region 381 441 - -
Ssu8g0048 443 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 380 433 IPR045863 -
Ssu8g0048 443 PANTHER MAGNESIUM TRANSPORTER MRS2-10 3 443 - -
Ssu8g0048 443 CDD Mrs2_Mfm1p-like 52 440 IPR039204 -
Ssu8g0048 443 Gene3D - 40 123 - -
Ssu8g0048 443 Coils Coil 224 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0048 Ssu-Chr8 827708 831037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0048 1 443 MRS2 Gene Family AT1G16010 86.036 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0048 K16075 - gmx:100779803 783.482