Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0046 ATGTTGATCAACGTGAAGCAGTCGACGATGGTGCGGCCGGCAGAGGAGACGCCGCGGAGGGCGTTGTGGAACTCGAACGTGGACTTGGTGGTGCCGAATTTCCACACGCCCAGCGTGTACTTCTATAGGCCAAACGGGGCCTCCAATTTCTTCGACGCCAACGTTATGAAGGAGGCTCTGAGCAAGGCCCTCGTCCCTTTCTACCCAATGGCCGCCCGCCTCCGCCGCGACGAGGACGGCCGCGTCGAGATTTATTGCGACGGTCAGGGCGTGCTCTTCGTCGAGGCTGACACCACCGCCGCCATCGACGACTTCGGAGACTTCGCTCCCACCCTTCAGCTCCGCCAGCTTATCCCCGCCGTTGATTATTCTGCCGGAATTGAAACGTATCCGCTGTTGGTGTTGCAGGTAACATATTTCAAATGTGGAGGGCTCTCATTAGGTGTTGGCATGCAACACCATGTAGCAGATGGAGCATCTGGTCTTCACTTTATCAATTCGTGGTCAGATGTGGCTCGTGGCTTGGATATTTCCCTCCCCCCATTCATTGACAGGACACTACTCCGTGCCCGGGATCCACCTCAACCTGTTTTTGATCACATTGAATACAAGCCCCCACCAGCCATGAAGACTCCCCTGCAACCCGCAAAACCAGGCTCTGACAGTGCAGCGGTCTCTATTTTCAAATTGACTCGTGACCAACTGAACATCCTCAAGGGTAAGTCCAGAGAAGATGGCAACACAATCAGCTATAGCTCTTATGAGATGTTGTCGGGTCATGTATGGAGAAGTGTGTGCAAGGCAAGAGCACTTCCTGATGACCAAGAAACCAAAATGTACATTGCAACTGATGGAAGGTCAAGGCTGCAACCTCCCCTCCCCCCGGGTTACTTTGGCAATGTGATCTTCACCGCCACTCCTATGGCAGTGGCAGGTGATCTCATGTCAAAACCAACATGGTATGCTGCAAGTATAATCCACAATGCATTAATAAGAATGGACAACGAATATTTGAGATCGGCTCTTGACTTTCTAGAGCTACAGCCTGATCTAAAAGCTCTTGTTCGTGGAGCACATACTTTTAGGTGTCCAAATCTTGGTATCACTAGCTGGGTAAGGCTTCCAATCCATGATGCTGACTTTGGTTGGGGAAGACCCATTTTCATGGGACCTGGTGGGATTGCATACGAGGGGCTATCTttcataattccaagctcaacaAATGATGGGAGCTTATCTGTGGCAATCGCTCTGCCGCCTGAGCAGATGAAGCTGTTTCAGGAATTGATTTATGACATTTGA 1302 0.5054 MLINVKQSTMVRPAEETPRRALWNSNVDLVVPNFHTPSVYFYRPNGASNFFDANVMKEALSKALVPFYPMAARLRRDEDGRVEIYCDGQGVLFVEADTTAAIDDFGDFAPTLQLRQLIPAVDYSAGIETYPLLVLQVTYFKCGGLSLGVGMQHHVADGASGLHFINSWSDVARGLDISLPPFIDRTLLRARDPPQPVFDHIEYKPPPAMKTPLQPAKPGSDSAAVSIFKLTRDQLNILKGKSREDGNTISYSSYEMLSGHVWRSVCKARALPDDQETKMYIATDGRSRLQPPLPPGYFGNVIFTATPMAVAGDLMSKPTWYAASIIHNALIRMDNEYLRSALDFLELQPDLKALVRGAHTFRCPNLGITSWVRLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSSTNDGSLSVAIALPPEQMKLFQELIYDI 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0046 433 Gene3D - 1 205 IPR023213 -
Ssu8g0046 433 PANTHER SHIKIMATE/QUINATE HYDROXYCINNAMOYLTRANSFERASE 4 432 - -
Ssu8g0046 433 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 432 - -
Ssu8g0046 433 Pfam Transferase family 3 429 - -
Ssu8g0046 433 Gene3D - 212 433 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0046 Ssu-Chr8 800237 806767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0046 1 433 Monolignol Biosynthesis Gene Families AT5G48930 78.291 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0046 K13065 - gmx:100801923 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0046 8 800237 806767 Ssu8g0046 8 800237 806767 ECH
Ssu8g0046 8 800237 806767 Ssu4g3523 4 86248484 86252661 PCT