Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0044 ATGGTTTTCTTACAAACCTTGTTCTTCCTTTTACTTGTAACATTTGGTCACTCCTTTCCAAGGGGCCACCACCCCCACCCTTCTCATTCTTTACTCACAGATAAAGCCGCTCTTCTGGAATTCAGAAAAACAATCATATCAGACCCGCATTCCTCACTTGCTAACTGGGATGAAGCTGTTCCTGTGTGCAACTTCACGGGGGTCGAATGTGATGAATTCCATGACCGTGTTACACGATTAATCCTATATGATAAAGGTCTAGTGGGGCTGCTTTCACCCGTTCTTTCCAATCTCACTGGACTGCACGACCTTGAGATTGTTAACAGTCACTTATTTGGCATTACTCCACCTGAATTTTCCTATCTCAGACGCGTGCACCGTATCATCCTTGAGGGGAATAATTTGCATGGCACAATACCAGAGTCCTTTTCCAAGCTCTCCAAGCTTAACATCCTAgtcattaaggaaaataatatatcaGGTTCACTTCCTCCATCTCTCTTTTCCAACTGCACTCTGCTAGACGTTGTGGACTTTTCCAGCAACTCATTAACTGGTCAAATACCAGAAGAGATTGGAAACTGCCCTGGCCTGTGGAGTATCAGTTTATACAATAATCAATTTACTGGACAACTTCCTCTCTCGTTGACCAATCTATCGCTTCAAAATTTGGACGTGGAGTACAATTATCTGTCTGGTGAATTGCCTACAGAGTTTGTAAGCAGCTGGCCATATCTCCTTTATCTTCACTTATCATACAACAATATGGTAAGTCATGACAACAACACCAATCTTGATCCATTTTTCACTGTTCTCAGAAACAACAGTGTTCTAGAGGAACTTGAATTGGCAGGCATGGGCCTTGGGGGAAGGTTCACCTATACTGTCGCCAGCCAACTCACCAGTCTAAAAACCCTACTCCTGCAGGAAAACCAAATTTTTGGATCTATTCCTCGCAGCTTAGCAAACCTTTCGAGGCTTTTCATTCTGAATTTAACATCCAATCTTCTAAATGGAACTATATGCTCTGATATCTTCACATTACCAAAGTTGGAACAACTTTTCTTATCATGCAACCTTTTCAAAACTCCTATTCCTGCAGCAATAGGCAAGTGTCGTAATCTGGGTCTACTGGATCTGTCACACAATCAATTCTCAGGTAGGATTCCAGACAGTTTGGGAAATTTGGTTAGACTAAATTCTTTGTTTCTCAACAATAACCTTCTCTCAGGAACAATCCCTCCCACATTGGGACGGTGCAACAATCTGTACAGGCTTGACTTGTCCCATAATAGATTAGCAGGAAGCATCCCACTGGAACTGGCAGGCTTGCATGAGATCAGAATTTTCATAAATGTCTCTCATAACCACCTTGAAGGTCCCCTGCCAATTGAGCTCAGCAAATTCGAGAAGGTTCAGGAGATAGATCTTTCGTCCAATTACCTAACTGGAAGTATCTTCCCTCAGATAGCAGGATGCATTGCTGtttcaatgattaatttttcaaacaattttcttCAAGGTGAGCTCCCACGGTCCCTAGGTAATCTGAAGAACCTCGAATCTTTTGATGTTTCAAGAAATCAGTTATCTGGATTGATACCAGCAACACTTGGTAAAATTGACACCCTCACTTTTctcaatttatcatttaacaATCTGGAAGGAAAGATTCCATCTGGTGGTGTCTTTAATTCAGTTTCAAACTTGTCGTTCTTAGGAAATCCACAACTTTGTGGGACAATTGTAGGCATATCCTTGTGCTCAAAAAGGAGAAGATGGTTTCACACTCGTTTGTTATTGATTATATTCATTTTGGTCATCTTCATATCAACATTGTTGTCAATAATTTGCTGTATAATTGGATGCAAGCGTCTAAAAGTAATGATCAGCTCTCACAGGACTGAGGCAAGCAAAAATGCAGCTAGACCTGAGTTGATTAGTAACTTCCCAAGAATCACGTATAAGGAACTGTCAGATGCCACTGGAGGATTTGACAATCAGAGACTTGTTGGATCAGGTAGTTACGGACATGTCTACAGGGGTGTTCTCACGAATGGGACACCAATAGCAGTCAAGGTGCTGCATTTGCAATCTGGAAATTCTACCAAAAGCTTTAACAGAGAATGCCAAGTTTTGAAGAGAATTAGACACAGAAATCTGATAAGGATTATCACAGCATGTAGCCTAACTGATTTTAAGGCTCTTGTTCTACCTTATATGGCCAATGGGAGCTTGGAGAGCCGCCTCTATCCTTCTTGTGGATCATCAGACTTGAGTATTGTTCAGAGGGTGAATATTTGCAGTGATATAGCGGAAGGGATGGCCTATTTGCATCATCATTCTCCTGTCAGAGTCTTACACTGTGATCTTAAACCAAGCAATATTCTTCTCAATGATGACATGACAGCTCTCGTTTCTGATTTTGGGGTTGCAAGGCTAATTATGAGTGCTGGAGGTGGGGCTATTGATAACATCGGCAACTCTACTGCAAATTTATGTGGATCCATTGGATACACTGCACCAGAATATGGATTTGGATTAAATACATCTACCAAAGGAGATGTCTATAGCTTTGGCATTCTGGTTCTTGAGATGGTCACTAGAAGAAGACCAACGGATGACATGTTTGTTGGTGGGTTAAGTCTGCACATATGGGTAAAGAGTCACTTTCATGGAAGGGTAGAAAAAGTGGTAGATCCTGATTTGGTGACAGCCTCAAGAGATCAATCCCAAGAGGTTAAAAAGATGTGGGAAGTTGCTATTGCTGAGTTAATTGAGTTGGGGCTTCTTTGCACACAGGAGTCGCCTTTGACAAGACCAACCATGCTTGATGCAGCAGATGACTTAGATCGTCTCAAGAGATACCTTAATGGGGACACAACAGGAACTTTTGCCTCATCTCTTGGAATTTCTTCTTCCACTATAGGTGGTGAATGGTGA 2943 0.4105 MVFLQTLFFLLLVTFGHSFPRGHHPHPSHSLLTDKAALLEFRKTIISDPHSSLANWDEAVPVCNFTGVECDEFHDRVTRLILYDKGLVGLLSPVLSNLTGLHDLEIVNSHLFGITPPEFSYLRRVHRIILEGNNLHGTIPESFSKLSKLNILVIKENNISGSLPPSLFSNCTLLDVVDFSSNSLTGQIPEEIGNCPGLWSISLYNNQFTGQLPLSLTNLSLQNLDVEYNYLSGELPTEFVSSWPYLLYLHLSYNNMVSHDNNTNLDPFFTVLRNNSVLEELELAGMGLGGRFTYTVASQLTSLKTLLLQENQIFGSIPRSLANLSRLFILNLTSNLLNGTICSDIFTLPKLEQLFLSCNLFKTPIPAAIGKCRNLGLLDLSHNQFSGRIPDSLGNLVRLNSLFLNNNLLSGTIPPTLGRCNNLYRLDLSHNRLAGSIPLELAGLHEIRIFINVSHNHLEGPLPIELSKFEKVQEIDLSSNYLTGSIFPQIAGCIAVSMINFSNNFLQGELPRSLGNLKNLESFDVSRNQLSGLIPATLGKIDTLTFLNLSFNNLEGKIPSGGVFNSVSNLSFLGNPQLCGTIVGISLCSKRRRWFHTRLLLIIFILVIFISTLLSIICCIIGCKRLKVMISSHRTEASKNAARPELISNFPRITYKELSDATGGFDNQRLVGSGSYGHVYRGVLTNGTPIAVKVLHLQSGNSTKSFNRECQVLKRIRHRNLIRIITACSLTDFKALVLPYMANGSLESRLYPSCGSSDLSIVQRVNICSDIAEGMAYLHHHSPVRVLHCDLKPSNILLNDDMTALVSDFGVARLIMSAGGGAIDNIGNSTANLCGSIGYTAPEYGFGLNTSTKGDVYSFGILVLEMVTRRRPTDDMFVGGLSLHIWVKSHFHGRVEKVVDPDLVTASRDQSQEVKKMWEVAIAELIELGLLCTQESPLTRPTMLDAADDLDRLKRYLNGDTTGTFASSLGISSSTIGGEW 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0044 980 Gene3D Transferase(Phosphotransferase) domain 1 741 964 - -
Ssu8g0044 980 ProSiteProfiles Protein kinase domain profile. 665 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0044 980 CDD STKc_IRAK 671 953 - -
Ssu8g0044 980 PANTHER OS04G0122200 PROTEIN 23 959 - -
Ssu8g0044 980 SUPERFAMILY L domain-like 60 361 - -
Ssu8g0044 980 Gene3D Phosphorylase Kinase; domain 1 646 740 - -
Ssu8g0044 980 Pfam Protein kinase domain 666 875 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0044 980 SUPERFAMILY Protein kinase-like (PK-like) 644 950 IPR011009 -
Ssu8g0044 980 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Ssu8g0044 980 Gene3D Ribonuclease Inhibitor 33 146 IPR032675 -
Ssu8g0044 980 Gene3D Ribonuclease Inhibitor 147 220 IPR032675 -
Ssu8g0044 980 SUPERFAMILY L domain-like 329 580 - -
Ssu8g0044 980 Gene3D Ribonuclease Inhibitor 221 589 IPR032675 -
Ssu8g0044 980 PANTHER OS06G0186100 PROTEIN 23 959 - -
Ssu8g0044 980 SMART serkin_6 665 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0044 980 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Ssu8g0044 980 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Ssu8g0044 980 SMART LRR_typ_2 396 420 IPR003591 -
Ssu8g0044 980 SMART LRR_typ_2 517 540 IPR003591 -
Ssu8g0044 980 SMART LRR_typ_2 146 170 IPR003591 -
Ssu8g0044 980 SMART LRR_typ_2 300 324 IPR003591 -
Ssu8g0044 980 SMART LRR_typ_2 348 372 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0044 Ssu-Chr8 772770 776042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0044 33 940 Receptor kinase-like Gene Family AT3G47570 34.979 6.12e-165 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Ssu8g0044 Pkinase 8.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0044 - - gmx:100815766 1702.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0044 8 772770 776042 Ssu8g0044 8 772770 776042 ECH