Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0039 ATGGCTAAGACGTCACAGAAAAGCCTCAAGAACACTACTGCTGCTACTACCAACACCCCCACCAAGGTCAAGCGGTCACGCAAGACCATCCCAAGAGACACCCCTTCACAACGAAGCTCAATCTACCGGGGCGTTACAagGCATCGATGGACAGGTCGATATGAGGCTCATTTGTGGGATAAGACTTGCTGGAATGAATCGCAGAACAGGAAAGGAAGACAAGTATATCTCGGGGCATATGACGAAGAAGATGCGGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAACACACCATCCTCAATTTTCCGCTATCAAATTATCAAGACGAGCTTAAGGAGATGGAGGATCAATCTAAGGAAGAATATATTGGATCTTTAAGAAGAAAAAGTAGCGGCTTCTCTCGAGGAGTCTCAAAATATAGAGGCGTCGCAAGACACCATCACAATGGAAGATGGGAAGCTCGGATTGGCAGAGTCTTCGGCAACAAATATCTATACCTTGGAACTTATGCTACAGAAGAAGAAGCAGCGATGGCGTACGATATGGCGGCCATAGAGTACCGTGGACTTAATGCGGTTACAAACTTTGACCTTAGTCGTTATATCAAATGGCCACGTCCAAAATGCCAAGAAACACGTGGCAACCCTGAACATGAGGTTAAAGCCCACCATCTAAGCCCAACGACAAGCGAGATCACAACACTACCATCTGGCAATGCCACCGCAACAACTTCTTCATTGGGGCCTCTTTTTCAGTCATTGAGATTCAAAGAAGTGATAGAAAGGACTTCAGTTTCGGATTGCCCTCCACCACCTTCTTCACCCTCAAACCCTCCTCCTCGTACATTCCCTCAAGatattcaaacattttttgaaaGTCAAGATTCTGGAATCTACGCAGACAGTGATGACATTATATTTGGCGACTTGACCTCCATTGCTTCACCAATTTTTCATTGTGAGCTCAATgcttag 987 0.4529 MAKTSQKSLKNTTAATTNTPTKVKRSRKTIPRDTPSQRSSIYRGVTRHRWTGRYEAHLWDKTCWNESQNRKGRQVYLGAYDEEDAAARAYDLAALKYWGQHTILNFPLSNYQDELKEMEDQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATEEEAAMAYDMAAIEYRGLNAVTNFDLSRYIKWPRPKCQETRGNPEHEVKAHHLSPTTSEITTLPSGNATATTSSLGPLFQSLRFKEVIERTSVSDCPPPPSSPSNPPPRTFPQDIQTFFESQDSGIYADSDDIIFGDLTSIASPIFHCELNA 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0039 328 SUPERFAMILY DNA-binding domain 40 109 IPR016177 GO:0003677
Ssu8g0039 328 SUPERFAMILY DNA-binding domain 142 203 IPR016177 GO:0003677
Ssu8g0039 328 SMART rav1_2 41 113 IPR001471 GO:0003700|GO:0006355
Ssu8g0039 328 SMART rav1_2 143 207 IPR001471 GO:0003700|GO:0006355
Ssu8g0039 328 Gene3D AP2/ERF domain 142 203 IPR036955 GO:0003700|GO:0006355
Ssu8g0039 328 Gene3D AP2/ERF domain 41 109 IPR036955 GO:0003700|GO:0006355
Ssu8g0039 328 Pfam AP2 domain 41 99 IPR001471 GO:0003700|GO:0006355
Ssu8g0039 328 Pfam AP2 domain 142 193 IPR001471 GO:0003700|GO:0006355
Ssu8g0039 328 ProSiteProfiles AP2/ERF domain profile. 143 201 IPR001471 GO:0003700|GO:0006355
Ssu8g0039 328 CDD AP2 142 203 IPR001471 GO:0003700|GO:0006355
Ssu8g0039 328 MobiDBLite consensus disorder prediction 1 24 - -
Ssu8g0039 328 ProSiteProfiles AP2/ERF domain profile. 41 107 IPR001471 GO:0003700|GO:0006355
Ssu8g0039 328 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 311 - -
Ssu8g0039 328 MobiDBLite consensus disorder prediction 266 289 - -
Ssu8g0039 328 PRINTS Ethylene responsive element binding protein signature 183 203 IPR001471 GO:0003700|GO:0006355
Ssu8g0039 328 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Ssu8g0039 328 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 311 - -
Ssu8g0039 328 MobiDBLite consensus disorder prediction 214 234 - -
Ssu8g0039 328 MobiDBLite consensus disorder prediction 272 286 - -
Ssu8g0039 328 MobiDBLite consensus disorder prediction 214 229 - -
Ssu8g0039 328 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0039 Ssu-Chr8 706565 713297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0039 20 205 AP2-EREBP Transcription Factor Family AT5G57390 69.149 2.49e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ssu8g0039 AP2 4.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0039 K09285 - pop:112326885 445.277