Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0038 ATGAAGGAGTCCTCAACGACACGCGGTTACAGTTCTCTGTATTTCAATCCCCTGAACGACCTGAGGCACTGCCGTAGCTGCAGCAGCGACTATGTCCGAAAAGGCGATACCTTTCACTTTGAAGATCAAATTGAAACACATGACGAGAAGGAAAACGCGAGAGCGAATGCGAATGGGTCCTCTGTTGTGCCTAAGCCCAGGCCCAAGCCCTTGAGGTCTTTGTCCACAGACAGGATCTTGAAGCCCTCTTCGCTTGAGTTCTGCATGCAAATGAACGATCACAATTCCAACTCTCTCAACGTTTGGGACTACTCTGATTCGGAGTCAGCTCCTGCTTCCTCCTGGTCCGCACTGCCCAACAGGTCCTTGATCTGTAGACCCTTGCCTTTAGATATTGGAAGGTGCACGTGTTTTATTCTCAAGGAACCAACGCCGCAAGGACTATCAGGGGgcactttcttctctctttataCCAATGAAGGTCAGGGACGGCAGAATAGGAAACTAGCTGTGGCCCACCACAAGCGGCGGAATGGGAGGTCTCATTTCACCGTAGCTCAGAATGTAAAAGGACTATTGTCCCATTCAGATGATAATACTTTTCTTGGCACCGTAACAGCCAACCTCATCGGCTCAAAATACCACATTTGGGATCAGGGATATCGTCATAATTCCCGTACTAAACAACCAAAGCCACCTCTTGCTGTTGTGACGTATATACCTACAATAACTACATGTACAGGAAGTCACAGAAGCATGAAGGCGTATATACCCAACCATCAATCTATGTCACTCAAGAACCCAACCCAGCTACAACATATAAAAGGATTGACAATGAATTGGGAGGGAAAATTGGACAAAGTTCATCAACTATTCTCAAGGGTTCCACTTTACAACAAGATTTCAAAGCAATATGAGCTTGACTTTAGAGATAAAGCAAAGGCAGGACTTAGAATCCAAAGATCGGTAAAAAATTTCCAGCTGACTTTAGGGGAGAATGGGAGGCAGACGATCCTGCAGCTAGGGAGGGTGGGAAAATCAAAATTCGTTATGGACTACAGGTATCCTTTGACAGGTTACCAGGCATTTTGCATATGTTTGGCTTCCATGGATGCAAAGCTTTGTTGCACATTGTAG 1137 0.4521 MKESSTTRGYSSLYFNPLNDLRHCRSCSSDYVRKGDTFHFEDQIETHDEKENARANANGSSVVPKPRPKPLRSLSTDRILKPSSLEFCMQMNDHNSNSLNVWDYSDSESAPASSWSALPNRSLICRPLPLDIGRCTCFILKEPTPQGLSGGTFFSLYTNEGQGRQNRKLAVAHHKRRNGRSHFTVAQNVKGLLSHSDDNTFLGTVTANLIGSKYHIWDQGYRHNSRTKQPKPPLAVVTYIPTITTCTGSHRSMKAYIPNHQSMSLKNPTQLQHIKGLTMNWEGKLDKVHQLFSRVPLYNKISKQYELDFRDKAKAGLRIQRSVKNFQLTLGENGRQTILQLGRVGKSKFVMDYRYPLTGYQAFCICLASMDAKLCCTL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0038 378 PANTHER TUBBY-RELATED 6 376 - -
Ssu8g0038 378 Pfam Tub family 126 371 IPR000007 -
Ssu8g0038 378 PRINTS Tubby superfamily signature 201 225 IPR000007 -
Ssu8g0038 378 PRINTS Tubby superfamily signature 334 353 IPR000007 -
Ssu8g0038 378 PRINTS Tubby superfamily signature 314 330 IPR000007 -
Ssu8g0038 378 PRINTS Tubby superfamily signature 355 377 IPR000007 -
Ssu8g0038 378 MobiDBLite consensus disorder prediction 46 74 - -
Ssu8g0038 378 SUPERFAMILY Tubby C-terminal domain-like 112 377 IPR025659 -
Ssu8g0038 378 Gene3D Tubby Protein; Chain A 117 377 IPR025659 -
Ssu8g0038 378 PANTHER TUBBY-LIKE PROTEIN 8 6 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0038 Ssu-Chr8 701541 703913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0038 80 271 TUB Transcription Factor Family AT1G16070 55.502 1.45e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Ssu8g0038 Tub 9.4e-43 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0038 K19600 - gmx:100803500 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0038 8 701541 703913 Ssu8g0038 8 701541 703913 ECH