Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0037 ATGGATAAAGTTTGTCTGAACAGTGAGCCGGTAGCAGATGAGGAAGGGGAAAGTAATGGGATGATTGAAGCACACAACCCTGTTGCTCCTGCGGTTGGAATGGAATTTGAGAGTTACGAGGATGTCTATTACTTCTATAATTGGTACGCCAAGGAACAGGGTTTTGGGGTTAGGGTCACAAATACCTGGTACCGCAAGAGTAAGGAACGTTACAGAGCAAAACTTAGCTGCAGCAGTGCAGGCTTCAAGAAAAGAAGTGAAGCGAATCGCCCCAGACCTGAAACCAGAACTGGTTGTCCTGCTATGATCAAGTTCAGGTTGATGGACACCAAAAGATGGAGAATTATAGAGGTTGAGCTTGACCACAATCACTTGATTAACCCCACCAGTGGAAAGTTTTATAAGTCCCATAAGCAAATTGCTGTTGGGACCAAAAGAACCTTCCAGTTGGATGCTGCTGGTGCTGAACAAGTTCACAAAATTAGGATGTTTCGAACTGTCATAATCGATGCTGAGGACGATGCTAGTCTAGATGTTGATGACGGGAAATCCCAAATGAGCCTCTACCCCCATCAGTTGAAGCTGAAGAAAGGTGATGCTGAAGCCATTCTGAATTTTCTTAGTCACCAGCAATTGGCAGATCCTGACTTCTTCTATGTGGTGGATGTCAATGAGAGAGGATGTTTGAGGAATTTGTTCTGGGCCGATGCAAAGTCCAGAGTGGCATACACTTATTTTAGTGATGTTGTAGCAATTGATACTGCGTGTTTGACAGGTGAATATCAAGTTCCCCTGGTTCTGTTCCTTGGGATAAACCACCATAAACAATCCATCTTGTTTGGCTGTGGATTGCTTGCTGGTGATACTGTTGAATCATATACATGGCTGTTCAGGGCGTGGCTTACGTGTATCTTAGGACGCCCCCCACAAATTATTGTTACCGACCAATGTGGAATCTTGCAGACTGTGGTTGCTGATGTCTTTCCAAGATCTACACACTGCCTTTGCTTGTTTAATATCATGCAAAAAATTCCAGAAAAGCTGGCAGCCTGCATAGAATATGAAGCAATCAATGCAGCTTTGAACAGAGCAGTTTATTCCTCTCTTAGGGCTGAGGAATTTGAATCAACTTGGGAGGACATGATGAAAAGAAACGAAATTAGAGGCAATAAATGGCTTCAATCTTTATATGAGGATCGGAAACGGTGGGCTCCAGTTTATCTGAAGGAAATATTCTTGGCAGGAATGTTTCCAATTCAACCAAGGGAtgatgtatcattttttttttacgggTACCTCAATGAACAAACTTctctaaaagaatttttagaaaaatatgttcaGGCTTTACAGACAAAGCGACAACTTGAGGCTCTAGCAGATTTGGACTCAAAATCTTCTAGCTTTGTGCCAAAATCAAGGTCTTACTTTGTGTTGCAGGTTTCAAAGTTATACACCAAtgaaatattaagaatgttTGAAAGGGAAGTGGAAGGGATGTTTTCTTGCTTTAGCTCCAGACAGATAAATATTGATGGACCAGTCATCACATACATTGTCCAGGAACAAGTTGCAGTTGAGGAAAATCAAAGAGATGCAAGAGATTATGAGGTGTGTTATAATGAAGCTGAAATGGAGGTCCTTTGCAATTGTGGTTTGTTCAATTTCAGAGGTTACTTGTGTAGGCATGCTTTATTTATCTTAAGCCAAAATGGGATAAAAGAGATCCCAGCACAGTTCATTCTTTCACGATGGAGAAAAGATATGAAGCGTAGCAATGTTTGTGATCACAGCTGTAGTGGCATTGATATTAGTAATCCAGTTCATAGGTATGACCATTTATACAGACAAATTGTGAAGGTTGTAGAGGAAGGTAAGAAATCTCATGATCATTACAGGACTGCGGTACAAGCATTGGAGAATATATTGAGCAAGCTTCATCTTGTAAACATAGAGGATTCCAATATAATGTACAAGTATTGA 1983 0.3999 MDKVCLNSEPVADEEGESNGMIEAHNPVAPAVGMEFESYEDVYYFYNWYAKEQGFGVRVTNTWYRKSKERYRAKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDTKRWRIIEVELDHNHLINPTSGKFYKSHKQIAVGTKRTFQLDAAGAEQVHKIRMFRTVIIDAEDDASLDVDDGKSQMSLYPHQLKLKKGDAEAILNFLSHQQLADPDFFYVVDVNERGCLRNLFWADAKSRVAYTYFSDVVAIDTACLTGEYQVPLVLFLGINHHKQSILFGCGLLAGDTVESYTWLFRAWLTCILGRPPQIIVTDQCGILQTVVADVFPRSTHCLCLFNIMQKIPEKLAACIEYEAINAALNRAVYSSLRAEEFESTWEDMMKRNEIRGNKWLQSLYEDRKRWAPVYLKEIFLAGMFPIQPRDDVSFFFYGYLNEQTSLKEFLEKYVQALQTKRQLEALADLDSKSSSFVPKSRSYFVLQVSKLYTNEILRMFEREVEGMFSCFSSRQINIDGPVITYIVQEQVAVEENQRDARDYEVCYNEAEMEVLCNCGLFNFRGYLCRHALFILSQNGIKEIPAQFILSRWRKDMKRSNVCDHSCSGIDISNPVHRYDHLYRQIVKVVEEGKKSHDHYRTAVQALENILSKLHLVNIEDSNIMYKY 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0037 660 Coils Coil 439 459 - -
Ssu8g0037 660 SMART 26again6 547 574 IPR006564 GO:0008270
Ssu8g0037 660 Pfam MULE transposase domain 249 343 IPR018289 -
Ssu8g0037 660 ProSiteProfiles Zinc finger SWIM-type profile. 536 572 IPR007527 GO:0008270
Ssu8g0037 660 Pfam FAR1 DNA-binding domain 45 127 IPR004330 -
Ssu8g0037 660 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 19 650 IPR031052 GO:0006355
Ssu8g0037 660 Pfam SWIM zinc finger 544 569 IPR007527 GO:0008270
Ssu8g0037 660 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 19 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0037 Ssu-Chr8 693375 695357 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu8g0037 MULE 9.2e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0037 - K17604 gmx:100796267 1141.33