Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0036 ATGAAGCTCACCGTCAAGACTTTGAAAGGCAACCATTTCGAAATCAGGGTTCAGCCCTCAGACACTATTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGCAAAGATAATTACCCATGTGGACAGCAGTTGCTGATTCACAATGGTAAGGTTTTGAAAGATGAAACTACATTAGCAGACAACAAGGTCTCTGAGGATGGCTTTCTTGTTGTCATGCTTAGTAAGAGTAAAACCTTGGGATCAGCTGGCACTTCAACTCAGCCTGCTAGCAACCCACCTATAACTGTATCAACACCAAATTCCACGTCTCTAGTACAAACTCAATCTGCAAACAACAATGCATCTGCCACAGATGTCACAACTACAAATGTGATTACAGATACTTATGATCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAGCAAATTATGGACATGGGTGGTGGCAGTTGGGACAGAGATTCAGTTAGCCGTGCTCTTCGTGCAGCTTACAATAACCCAGAGCGTGCTGTAGATTACTTGTATTCTggAATTCCTGAAGCAGCGGAAGTTGCTGTGCCAGCTGCTCCTTACCCAAATAGTCAGACAACTGAAACAGGTGGGGTCACTGCCGGAGCTGTTCCTGGGGTCCCTAACTCATCTCCCTTGAATATGTTTCCTCAGGAAACAATTTCTGATGCTGGAGTTGGAATTGGATCACTTGACTTTCTTAGAAACAATCCCCAGTTTCAAGCATTGCGTTCAATGGtgcaatccaatccacaaatTCTGCAGCCTGTACTTCGGGAACTTGGAAAGCAGAATCCTAATCTCTTAAGACTAATTCAAGATCATCATGCTGAGTTTCTCCAGTTGATTAACGAACCTGTTGAGGGTTCTGAAGGTGATATATTTGATCAACCCGAGCAAGAGATGCCTCATGCCATCAACGTGACACCAGCTGAGCAGGAGGCAATTGGAAGggtatgttttaaatttttaagtttgatttttgctcttttcattTCCATTAACTTACCCATTAGCTTCATATGTGCtgattaa 1065 0.4075 MKLTVKTLKGNHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKTLGSAGTSTQPASNPPITVSTPNSTSLVQTQSANNNASATDVTTTNVITDTYDQAASNLVAGSNLEQTIQQIMDMGGGSWDRDSVSRALRAAYNNPERAVDYLYSGIPEAAEVAVPAAPYPNSQTTETGGVTAGAVPGVPNSSPLNMFPQETISDAGVGIGSLDFLRNNPQFQALRSMVQSNPQILQPVLRELGKQNPNLLRLIQDHHAEFLQLINEPVEGSEGDIFDQPEQEMPHAINVTPAEQEAIGRVCFKFLSLIFALFISINLPISFICAD 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0036 354 CDD UBA1_Rad23_plant 137 185 - -
Ssu8g0036 354 Gene3D - 232 297 IPR036353 GO:0003684|GO:0006289|GO:0043161
Ssu8g0036 354 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 1 329 - -
Ssu8g0036 354 SMART CBM 239 282 IPR006636 -
Ssu8g0036 354 Pfam XPC-binding domain 241 296 IPR015360 GO:0003684|GO:0006289|GO:0043161
Ssu8g0036 354 SMART ubq_7 1 75 IPR000626 GO:0005515
Ssu8g0036 354 PRINTS DNA repair protein Rad23 signature 316 332 IPR004806 GO:0006289
Ssu8g0036 354 PRINTS DNA repair protein Rad23 signature 267 289 IPR004806 GO:0006289
Ssu8g0036 354 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Ssu8g0036 354 Pfam UBA/TS-N domain 143 181 IPR015940 -
Ssu8g0036 354 SUPERFAMILY Ubiquitin-like 1 84 IPR029071 -
Ssu8g0036 354 TIGRFAM rad23: UV excision repair protein Rad23 1 330 IPR004806 GO:0006289
Ssu8g0036 354 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Ssu8g0036 354 Gene3D - 136 186 - -
Ssu8g0036 354 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 141 184 IPR015940 -
Ssu8g0036 354 SUPERFAMILY XPC-binding domain 239 304 IPR036353 GO:0003684|GO:0006289|GO:0043161
Ssu8g0036 354 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 329 - -
Ssu8g0036 354 MobiDBLite consensus disorder prediction 81 102 - -
Ssu8g0036 354 SMART uba_6 143 183 IPR015940 -
Ssu8g0036 354 CDD Ubl_Rad23 1 74 - -
Ssu8g0036 354 Gene3D - 1 77 - -
Ssu8g0036 354 SUPERFAMILY UBA-like 139 191 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0036 Ssu-Chr8 685061 691974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0036 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 41.892 3.62e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0036 K10839 - gmx:100804038 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0036 8 685061 691974 Ssu4g3564 4 86688240 86691423 PCT