Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0032 ATGGACTCAACAGCTGCAGTGTTGTTGATCTTTCTTTCAGTTTCGGTGTGTTGCCACGGTACGATTATTGTATCCAAGGATGGGAGTGGAGATTATACAACGGTGGGTGAAGCCATTACGAAAGCTCCGGAGTTGAGTGACGAACCTCACACCATTCACGTTCGAGCAGGTACTTATGAAGAGTACGTAGTCATTCCTGCTGAGAAGACTAACATTAAGCTGGTTGGAGATGGACCTCACCACACCAAAATAGTAGGCTACCAAAACGGTTCCACCATAGATATCCGTGGAGAAGGGTTCATGGCAGAAAACATGGGATTTGCGAACTGGGCGGGGCTAAACGCAAGCGCTGCCGTGGCGGTTCGCAACGAGGCAAACAAGAGCATATTCTTCCGATGCTCCATCGAAGGACTCCAGGACACACTGTGGGCGGTTTGGGGGCGTCAGTTCTACAAGAACTGCGACATCTATGGGACGGTGGACTTCATCTACGGCAATGCAGCCGCAGTGTTCCAGGACTGCATGGTGTACGCGCGTTACCGAGAGTACGTGACGTTCACCGCTCAGTCGCGAGAGGATCCAAAGGAGAAGACTGGCTTCACATTCCAAAGATGCAAGTTCACAATGTCCCCACAGGACTCGGACAGAAAGTCAGAGGTGCGTGCCACGTTGGGCCGTCCTTTGAGAGCCTATTCCACAGTCGCCATCTTGCAGTCTTACATCGACTCCATCGTGGTTCCCCAAGGTTGGGAGCCCATGCCACACCAGCCCACTGACAAAGTCACCTACATCGAGTTTGACAATGTTGGGCCGGGCTCTAACACTAGTGACAGAGTTGATTGGCCTGGTGTTACAGTCCTCCGCCACCCAACCCAAGCAGCCCCTTTCACTGCTTCCTATCTCTTGGACGCCGACTCTTGGATTCCCTCCACAGGCGTTCCCTACGACAATGGACTCTAG 960 0.526 MDSTAAVLLIFLSVSVCCHGTIIVSKDGSGDYTTVGEAITKAPELSDEPHTIHVRAGTYEEYVVIPAEKTNIKLVGDGPHHTKIVGYQNGSTIDIRGEGFMAENMGFANWAGLNASAAVAVRNEANKSIFFRCSIEGLQDTLWAVWGRQFYKNCDIYGTVDFIYGNAAAVFQDCMVYARYREYVTFTAQSREDPKEKTGFTFQRCKFTMSPQDSDRKSEVRATLGRPLRAYSTVAILQSYIDSIVVPQGWEPMPHQPTDKVTYIEFDNVGPGSNTSDRVDWPGVTVLRHPTQAAPFTASYLLDADSWIPSTGVPYDNGL 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0032 319 SUPERFAMILY Pectin lyase-like 17 317 IPR011050 -
Ssu8g0032 319 PANTHER PECTINESTERASE 1 318 - -
Ssu8g0032 319 Pfam Pectinesterase 22 304 IPR000070 GO:0030599|GO:0042545
Ssu8g0032 319 Gene3D - 17 319 IPR012334 -
Ssu8g0032 319 PANTHER PECTINESTERASE 1 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0032 Ssu-Chr8 642754 646144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0032 22 319 Carbohydrate Esterase AT4G03930 42.444 2.36e-75 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0032 K01051 - gmx:102665195 547.354