Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0031 ATGGCTATTGAAACGAAACAAGGAAAGGAATTCATCTTCAGGTCGAAGCTTCCAGATATCTACATCCCGAAACACCTTCCCCTCCACGATTACTGCTTCGAGAATTTGCGCGAGTACGGATCACGGCCCTGTTTGATCAATGGAGCCACAGGGGCTGTGTACAGCTACTACGAGGTGGAGGGCACCGCCCGGAAAGTGGCGTCGGGGTTAAGCAAATTGGGCGTGCAACAGGGAGAGGTGATCATGATCCTGCTCCCGAACAGGCCCGAATTCGTGTTTGCGTTTATGGGGGCCTCTTATCGCGGTGCCATGGCCACTGCTGCCAACCCGTTCTTCACCCCGGCGGAGATTGCAAAGCAAGCCAAGGCTTCGAGTGCGAAGGTGCTGATCACGCAAGCCTCTTACTACGAGAAAGTGAAGGAGCTGGACGTGAAGTTGGTGTTCGTGGACTCTCCGCCCGAGGGTCATCTCCATTTCTCACAGCTGTgtgattgtgattgtgatgaagATAAGGGCGAGATGGACATCAAGCCTGATGACGTGGTGGCATTGCCGTATTCGTCGGGGACAACTGGACTTCCGAAAGGGGTGATGCTGACGCACAAGGGGTTGGTGACCAGCATTGCTCAGCAGGTGGACGGTGAGAATCCAAACCTGTACTACCACTGCGAGGACACCATCCTGTGCGTGCTTCCCCTCTTCCACATCTACTCCCTCAACTCTGTCTTGCTTTGTGGCTTGCGAGCCAAGGCTACCATTCTCCTCATGCCTAAGTTCGAAATAAATGCCTTCCTCGCTCTCATTCACAAACACAAAGTCACAATTGTCCCCCTTGTCCCACCCATTGTTTTAGCCATCGCCAAGTCACCCGATCTCAACAACTATGACCTCTCTTCCATAAGGGTCTTCAAGTCCGGGGGAGCTCCTCTCGGTAAAGAACTCGAACAAACCGTCAGGGCCAAATTCCCCAACGCTAAACTTGGCCAgGGATACGGGATGACTGAGGCAGGGCCCGTCCTAACAATGTCCTTAGCTTTTGCGAAAGAACCGGTAGATGTAAAACCAGGTGCATGTGGAACCGTTGTAAGAAATGCAGAGATGAAGATTGTGGATCCTGAAACCGGTGATTCTTTACCTCGAAACCAGTCCGGTGAAATTTGCATAAGAGGCGACCAGATTATGAAAGGTTATCTAAATGATCGAGAGGCTACGGAGAGAACCATAGACAAAGATGGTTGGTTGCACACAGGTGACATCGGGTACATCGACGATGACGATGAGTTATTCATCGTTGATAGGCTGAAGGAATTGATCAAATACAAAGGATTTCAAGTGGCTCCAGCTGAACTTGAAGCCCTTCTTCTCACTCATCCTAAGATCTCCGATGCTGCTGTTGTTCCAATGAAGGATGAAGCTGCAGGAGAGGTACCTGTTGCATTTGTGGTGACATCAAATGGTTATACCGACACAACCGAGGATGAAATTAAGCAGTTTATCTCCAAACAGGTGGTGTTTTACAAAAGAATAAACCGAGTATTCTTCATTGATGCAATTCCCAAGTCACCGTCAGGCAAAATCTTGCGTAAGGATCTAAGAGCAAAGCTAGCAGCAGGTGTTCTAAACCcattaatataa 1635 0.4887 MAIETKQGKEFIFRSKLPDIYIPKHLPLHDYCFENLREYGSRPCLINGATGAVYSYYEVEGTARKVASGLSKLGVQQGEVIMILLPNRPEFVFAFMGASYRGAMATAANPFFTPAEIAKQAKASSAKVLITQASYYEKVKELDVKLVFVDSPPEGHLHFSQLCDCDCDEDKGEMDIKPDDVVALPYSSGTTGLPKGVMLTHKGLVTSIAQQVDGENPNLYYHCEDTILCVLPLFHIYSLNSVLLCGLRAKATILLMPKFEINAFLALIHKHKVTIVPLVPPIVLAIAKSPDLNNYDLSSIRVFKSGGAPLGKELEQTVRAKFPNAKLGQGYGMTEAGPVLTMSLAFAKEPVDVKPGACGTVVRNAEMKIVDPETGDSLPRNQSGEICIRGDQIMKGYLNDREATERTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPKISDAAVVPMKDEAAGEVPVAFVVTSNGYTDTTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKDLRAKLAAGVLNPLI 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0031 544 Pfam AMP-binding enzyme C-terminal domain 449 525 IPR025110 -
Ssu8g0031 544 Gene3D - 6 434 IPR042099 -
Ssu8g0031 544 ProSitePatterns Putative AMP-binding domain signature. 184 195 IPR020845 -
Ssu8g0031 544 SUPERFAMILY Acetyl-CoA synthetase-like 13 538 - -
Ssu8g0031 544 Pfam AMP-binding enzyme 34 440 IPR000873 -
Ssu8g0031 544 Gene3D - 435 538 IPR045851 -
Ssu8g0031 544 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 537 - -
Ssu8g0031 544 CDD 4CL 22 531 - -
Ssu8g0031 544 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0031 Ssu-Chr8 635866 640062 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0031 5 503 Monolignol Biosynthesis Gene Families AT1G51680 69.804 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0031 K01904 - gmx:547944 929.858