Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0030 ATGCAGATACAGATGGGTTCGGTAGAGGACAAGGTAGACCAGGATAATTTTGACGACCACGCTCCCTTCACCTCTTCCCCATCTGCCTCTAAAGTCCATACTTTCGATTTCGAAACCAGCGTCGTTGATTTGCGCAGGTCATCCATCTTTAACATAACACGTTTGAGCAGGAGTGTATATGTTGTCTTAATTAAGGCCAAGATCAACTTGTTGCTTCCCTTTGGTCCATTGGCTATTTTGCTACATTACCTAACCGGACACCATgGATGGGTGTTCTTCTTCACGTTATTGGGTATTACTCCTTTGGCAGAACGTCTGGGTTATGCTACCGAGCAGCTTGCGTTCTACACAGGACCAACAGTTGGGGGTCTGCTTAATGCCACATTTGGCAATGCAACTGAAATGATTATAtcaatttatgcattgaaaAGCGATATGATAAGGGTTGTTCAGCAATCTTTACTTGGTTCAATCTTGTCAAATATGCTTCTAGTTCTTGGCTGTGCATTCTTTACTGGTGGCATTGCCCACTACAAAAAAGAACAGGTTTTTGATAAGGCAGCTGCTGTTGTCAATTCTGGGTTACTCCTGATGGCTGTAATGGGAATACTATTTCCTGCTGTGCTTTACTTTACTCACTCAGAAGTTCATCAAGGGAAGTCAGTGTTGTCTCTATCAAGATTTAGCAGCTGCGTAATGCTAGTGGCGTATGCAAGCTACCTTTTCTTTCAACTTAGAAGTCAGCAAAATGTTTATACTCCAGTTGTTGAGGAAGGAGATAATGGTGAAAATTCTGATGAGGAGGAAGAAATTGAACTAACTAAATGGGAGGCAATAATCTGGCTTGCTATTTTGACAGCATGGGTATCTATATTGTCTGGATACCTTGTAGATGCCATAGAGGGAGCATCTGAGTCATTGAATATGTCAATGGCTTTTATTTCTGTCATTTTGCTTCCAATTGTAGGCAATGCTGCAGAACATGCCAGTGCTATCATGTTTGCCATGAAGGACAAGCTTGATATCACTATTGGAGTTGCTATTGGATCATCTATACAGATATCTATGTTTGTGATCCCCTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTGAATTTTCAACTCTTTGAGACTACCACACTTTTTATCACTGTGTTGGTAGTTGCATTTATGATGCAGGAAGGAacctcaaattattttaaaggctTGATGCTTATTCTATGCTATCTTATAGTTGCTGCCAGTTTTTACGTACATGTAGACCCTAAAAATGGTGATGACTAA 1296 0.3989 MQIQMGSVEDKVDQDNFDDHAPFTSSPSASKVHTFDFETSVVDLRRSSIFNITRLSRSVYVVLIKAKINLLLPFGPLAILLHYLTGHHGWVFFFTLLGITPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSDMIRVVQQSLLGSILSNMLLVLGCAFFTGGIAHYKKEQVFDKAAAVVNSGLLLMAVMGILFPAVLYFTHSEVHQGKSVLSLSRFSSCVMLVAYASYLFFQLRSQQNVYTPVVEEGDNGENSDEEEEIELTKWEAIIWLAILTAWVSILSGYLVDAIEGASESLNMSMAFISVILLPIVGNAAEHASAIMFAMKDKLDITIGVAIGSSIQISMFVIPFCVVVGWCMGKEMDLNFQLFETTTLFITVLVVAFMMQEGTSNYFKGLMLILCYLIVAASFYVHVDPKNGDD 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0030 431 Gene3D - 265 422 IPR044880 -
Ssu8g0030 431 Gene3D - 119 257 IPR044880 -
Ssu8g0030 431 PANTHER VACUOLAR CATION/PROTON EXCHANGER 5 429 - -
Ssu8g0030 431 TIGRFAM caca2: calcium/proton exchanger 61 420 - -
Ssu8g0030 431 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 5 429 IPR004713 GO:0006812|GO:0008324|GO:0016021
Ssu8g0030 431 Pfam Sodium/calcium exchanger protein 279 419 IPR004837 GO:0016021|GO:0055085
Ssu8g0030 431 Pfam Sodium/calcium exchanger protein 90 245 IPR004837 GO:0016021|GO:0055085
Ssu8g0030 431 TIGRFAM cax: calcium/proton exchanger 71 421 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0030 Ssu-Chr8 620291 631671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0030 2 430 Antiporters AT1G55730 69.302 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0030 K07300 - gmx:100806000 735.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0030 8 620291 631671 Ssu8g0030 8 620291 631671 ECH