Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu8g0023 | ATGAGGTggctttttttcttctcttgccTGTTTTATGTTGTCTCTGCACTCACCTCCGATGGGGTGACTCTGTTGTCACTCTTGAGGCACTGGACATCGGTGCCTTCTTCCATAAACACAACCTGGCTTGCCTCTGATTCCACTCCATGCTCCTCCTGGGCAGGAGTTCAATGTGACCATGCCCACAATGTGGTCTACCTTAACCTCACAGGTTATGGGATTGCCGGTCAATTAGGACCTGAAATTGGAAATATTACTCGCCTACAGTACTTAGACCTTACTGATAACAACCTTAATGGCCAAATACCCGACGCCTTCAGAAACTTGCACAACCTCAAGTTTCTCAGCCTTTCTCAAAATCAACTGTCCGGTGAAATTCCAGATTCCTTGACTCAAATCCCTCGATTACAACTTGTTGATCTCTCTCTTAACAGTTTAAGTGGTTCCATCCCCACAGGTATAGGGAACATGACTGAGCTCTTGCAGTTGTATCTTCAGAGTAACCAGTTGTCTGGGACAATTCCCTCATCCATTGGGAACTGCAGCAAATTACAAGAATTGTTTTTGAATGGAAATCAGTTGGAGGGTATCCTGCCTCAGAGTCTAAACAATCTCAATGATCTTGCATTTCTTGATGTCGCCAGAAATAGACTTAGGGGTACCATTAATTTGGGTTCTGGCAgttgtaaaaatttacaatttttggaTCTCTCGTTCAATGAGTTTAGTGGAGGCCTTCCCTCAAGCTTGGGGAACTGCAGTGGTTTATCACAATTTGCTGCCGTGAATTGCAATTTAGTAGGGAATATTCCAACCTCCTTTGGCCTACTGACCGAGCTTTCTATTCTACACCTTCCCGAGAACCATTTATCCGGAAAAATACCTCCAGAAATTGGCAACTGCAAGTCTTTGAAACAGTTACATCTGTATTCCAATCGACTTCAGGGAAACATTCCAAATCAACTGGGAAAACTAAGTAAACTGGTGGATCTTGAATTGTTTAAAAACCAATTGACGGGTGAAATTCCACTTAGCATCTGGAAGATTAAAGGTCTTGAGCATCTCCTTGTGTATAACAATAGTCTTTCTGGGGAACTGCCTCTGGAGATGACGGAGCTCAAGCAACTGAAAAATATCTCATTGTTTAACAACCAGTTCTCCGGTGTCATACCTCAAAGCTTGGGAATCAACAGCAGTTTAGTTCTGTTGGACttcacaaataataaattcagTGGCAACATCCCACCAAATCTGTGCTTTGGCAAGAAGTTAATCATCTTGAATTTGGGCATCAATCAACTTCAAGGCAGCATACCTCCTGATGTTGGGAGCTGTACAACACTTACAAGGTTAATTCttgaacaaaataatttcaCTCGGCCTCTTCCTGATTTTAAAAGCAATCCAAATCTCGCATATATGGATATCAGCAACAACAAAATCCATGGAGCAATTCCATCAAGTTTGGGAAATTGCAGACATCTCACTGTCTTAATTTTGTCCATGAACAAATTTACAGGGCTTATACCCTCAGAGCTAGGGAACCTTGTGAATCTTCGGACTTTGAATCTCGCTCACAACAACTTAGAAGGTCCTTTGCCCTCTCAGCTGTCAAACTGTTCCAAAATGGACAGGTTTGATGTTGGATTCAATTTCCTAAATGGTTCATTGCCATCAAGTTTGCAGAGCTGGACAGGGCTAACCACACTAATTTTGAGTGAGAATCACTTTAGTGGGGGCATCCCAGCTTTCTTGTCAGAATTTAAAAACCTTTCTGAACTACAACTTGGTGGCAATATGTTTGGCAGCAAAATTCCCAGATCAGTTGGAGCACTGCAGAATTTGAGGTATGGTTTGAATCTAAGTTCAAACGGGCTGATAGGTGACATTCCTGTAGAAATTGGGAACCTGAACATGTTGCAAACACTGGATCTATCTCAGAACCATTTGACAGGAAGCATAGAAGTTCTTGGTGAACTCCTCTCATTAGTTGAAGTCaatatttcatacaattctTTTCTTGGTCATGTACCAAAGATGCTAATGAAGTTTCACATGTCATCATTTCTGGGCAATCCTGGCCTATGTATCAGTTGTTCAGCGTCTGATGGTTTGGCTTGCACTGAAAAGAGCTCTATAAAACCATGTGATAACAAATCAACTAAGCAGAAAGGCCTCAGTAAAGTTGAAATTGTGATGATAGCTCTTGGGTCCTCAATAATTGTTGTTTTGCTGATGCTGggattagtttatatttttgtttttggcagAAAAGCTAAGCAGGAAGTTCATATCTCTGTTGAAGAGAGTTCTTCACCCCTTCTTAACAAAGTCATGGAGGCTACAGAAAACCTAAATGATCGGTATATTATTGGCAGAGGAGCCCATGGAGTTGTTTATAAAGCCCTGATAGGTCCAGACAAAGCTTTTGCTGCGAAGAAGATAGGATTTACTGTGAGCAAAGGTAAGAACCTGAGCATGGTCAGAGAAATTCAAACCCTTGGAAAAATTAGGCATCGAAATCTGGTTAAATTGGAAGACTTTTGGTTGAGAAAAGATTATGGTCTAATTTTGTACAGCTACATGCCAAATGGAAGTCTTCATGATGTTTTGCATGAAAAGACACCACCACCAACCTTAGAGTGGAATGTCCGGTATAAGATAGCTGTTGGAATTGCTCATGGATTGGCTTATCTCCATTATGACTGTGATCCTCCCATAGTGCACCGAGACATCAAGCCAGGCAATATACTTCTAGACTCTGATATGGAGCCTCACATTGCTGACTTTGGTATTGCCAAACTTTTGGATCAGTCTTCTGCTTCAAATCCTTCCATTTCTGTGCGGGGTACAATTGGTTATATTGCACCAGAGAATGCTTATACAACAGCAAATAGTAGGGAGTCTGATGTATACAGTTACGGGGTAGTTTTGCTTGAGCTGATAACCAGAATGAAGGCAGCAGATCCTTCGTACATGGAGGGTACTGATGTAGTGGATTGGGTTAGGTCTGTGTGGAGGGAAACGGGagaaattaatcaaattgttGATTCAAGCCTTGCAGAGGAATTTCTAGATACCCATATAATGGAAAAAGTTACCAAAGTGCTTATGGTGGCTTTGAGATGTGCTGAGAAGGATCCACACAAGAGACCGACAATGAGAGATGTTACCAAGCAGTTAACGGATGCCAATCCACAGACAAGAAGTACAAAGGGCTAG | 3222 | 0.4041 | MRWLFFFSCLFYVVSALTSDGVTLLSLLRHWTSVPSSINTTWLASDSTPCSSWAGVQCDHAHNVVYLNLTGYGIAGQLGPEIGNITRLQYLDLTDNNLNGQIPDAFRNLHNLKFLSLSQNQLSGEIPDSLTQIPRLQLVDLSLNSLSGSIPTGIGNMTELLQLYLQSNQLSGTIPSSIGNCSKLQELFLNGNQLEGILPQSLNNLNDLAFLDVARNRLRGTINLGSGSCKNLQFLDLSFNEFSGGLPSSLGNCSGLSQFAAVNCNLVGNIPTSFGLLTELSILHLPENHLSGKIPPEIGNCKSLKQLHLYSNRLQGNIPNQLGKLSKLVDLELFKNQLTGEIPLSIWKIKGLEHLLVYNNSLSGELPLEMTELKQLKNISLFNNQFSGVIPQSLGINSSLVLLDFTNNKFSGNIPPNLCFGKKLIILNLGINQLQGSIPPDVGSCTTLTRLILEQNNFTRPLPDFKSNPNLAYMDISNNKIHGAIPSSLGNCRHLTVLILSMNKFTGLIPSELGNLVNLRTLNLAHNNLEGPLPSQLSNCSKMDRFDVGFNFLNGSLPSSLQSWTGLTTLILSENHFSGGIPAFLSEFKNLSELQLGGNMFGSKIPRSVGALQNLRYGLNLSSNGLIGDIPVEIGNLNMLQTLDLSQNHLTGSIEVLGELLSLVEVNISYNSFLGHVPKMLMKFHMSSFLGNPGLCISCSASDGLACTEKSSIKPCDNKSTKQKGLSKVEIVMIALGSSIIVVLLMLGLVYIFVFGRKAKQEVHISVEESSSPLLNKVMEATENLNDRYIIGRGAHGVVYKALIGPDKAFAAKKIGFTVSKGKNLSMVREIQTLGKIRHRNLVKLEDFWLRKDYGLILYSYMPNGSLHDVLHEKTPPPTLEWNVRYKIAVGIAHGLAYLHYDCDPPIVHRDIKPGNILLDSDMEPHIADFGIAKLLDQSSASNPSISVRGTIGYIAPENAYTTANSRESDVYSYGVVLLELITRMKAADPSYMEGTDVVDWVRSVWRETGEINQIVDSSLAEEFLDTHIMEKVTKVLMVALRCAEKDPHKRPTMRDVTKQLTDANPQTRSTKG | 1073 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu8g0023 | 1073 | PANTHER | LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN | 4 | 93 | - | - | |
Ssu8g0023 | 1073 | Gene3D | Transferase(Phosphotransferase) domain 1 | 862 | 1072 | - | - | |
Ssu8g0023 | 1073 | SMART | serkin_6 | 785 | 1068 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Ssu8g0023 | 1073 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 907 | 919 | IPR008271 | GO:0004672|GO:0006468 | |
Ssu8g0023 | 1073 | Gene3D | Ribonuclease Inhibitor | 22 | 131 | IPR032675 | - | |
Ssu8g0023 | 1073 | PANTHER | LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN | 84 | 1059 | - | - | |
Ssu8g0023 | 1073 | SUPERFAMILY | RNI-like | 67 | 441 | - | - | |
Ssu8g0023 | 1073 | Gene3D | Ribonuclease Inhibitor | 132 | 220 | IPR032675 | - | |
Ssu8g0023 | 1073 | SUPERFAMILY | Protein kinase-like (PK-like) | 769 | 1061 | IPR011009 | - | |
Ssu8g0023 | 1073 | Gene3D | Ribonuclease Inhibitor | 466 | 701 | IPR032675 | - | |
Ssu8g0023 | 1073 | ProSiteProfiles | Leucine-rich repeat profile. | 639 | 661 | IPR001611 | GO:0005515 | |
Ssu8g0023 | 1073 | MobiDBLite | consensus disorder prediction | 1058 | 1073 | - | - | |
Ssu8g0023 | 1073 | MobiDBLite | consensus disorder prediction | 1048 | 1073 | - | - | |
Ssu8g0023 | 1073 | Pfam | Leucine rich repeat | 160 | 218 | IPR001611 | GO:0005515 | |
Ssu8g0023 | 1073 | Pfam | Leucine rich repeat | 87 | 146 | IPR001611 | GO:0005515 | |
Ssu8g0023 | 1073 | Pfam | Leucine rich repeat | 469 | 529 | IPR001611 | GO:0005515 | |
Ssu8g0023 | 1073 | SUPERFAMILY | RNI-like | 379 | 686 | - | - | |
Ssu8g0023 | 1073 | Gene3D | Phosphorylase Kinase; domain 1 | 755 | 861 | - | - | |
Ssu8g0023 | 1073 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 84 | 1059 | - | - | |
Ssu8g0023 | 1073 | Pfam | Leucine Rich Repeat | 231 | 253 | IPR001611 | GO:0005515 | |
Ssu8g0023 | 1073 | ProSitePatterns | Protein kinases ATP-binding region signature. | 791 | 814 | IPR017441 | GO:0005524 | |
Ssu8g0023 | 1073 | SMART | LRR_sd22_2 | 181 | 207 | - | - | |
Ssu8g0023 | 1073 | SMART | LRR_sd22_2 | 516 | 542 | - | - | |
Ssu8g0023 | 1073 | SMART | LRR_sd22_2 | 109 | 132 | - | - | |
Ssu8g0023 | 1073 | SMART | LRR_sd22_2 | 637 | 658 | - | - | |
Ssu8g0023 | 1073 | SMART | LRR_sd22_2 | 325 | 354 | - | - | |
Ssu8g0023 | 1073 | SMART | LRR_typ_2 | 109 | 133 | IPR003591 | - | |
Ssu8g0023 | 1073 | SMART | LRR_typ_2 | 157 | 181 | IPR003591 | - | |
Ssu8g0023 | 1073 | SMART | LRR_typ_2 | 85 | 108 | IPR003591 | - | |
Ssu8g0023 | 1073 | SMART | LRR_typ_2 | 637 | 660 | IPR003591 | - | |
Ssu8g0023 | 1073 | SMART | LRR_typ_2 | 182 | 204 | IPR003591 | - | |
Ssu8g0023 | 1073 | SMART | LRR_typ_2 | 229 | 253 | IPR003591 | - | |
Ssu8g0023 | 1073 | SMART | LRR_typ_2 | 277 | 301 | IPR003591 | - | |
Ssu8g0023 | 1073 | SMART | LRR_typ_2 | 516 | 540 | IPR003591 | - | |
Ssu8g0023 | 1073 | SMART | LRR_typ_2 | 588 | 612 | IPR003591 | - | |
Ssu8g0023 | 1073 | Gene3D | Ribonuclease Inhibitor | 221 | 465 | IPR032675 | - | |
Ssu8g0023 | 1073 | PANTHER | RECEPTOR KINASE-LIKE PROTEIN XA21 | 4 | 93 | - | - | |
Ssu8g0023 | 1073 | ProSiteProfiles | Protein kinase domain profile. | 785 | 1068 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Ssu8g0023 | 1073 | Pfam | Protein kinase domain | 790 | 1059 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu8g0023 | Ssu-Chr8 | 576124 | 579434 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu8g0023 | 14 | 1070 | Receptor kinase-like Gene Family | AT1G73080 | 52.459 | 0.0 | 1045 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Ssu8g0023 | Pkinase | 2.9e-44 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu8g0023 | - | - | gmx:100778035 | 1802.33 |