Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0023 ATGAGGTggctttttttcttctcttgccTGTTTTATGTTGTCTCTGCACTCACCTCCGATGGGGTGACTCTGTTGTCACTCTTGAGGCACTGGACATCGGTGCCTTCTTCCATAAACACAACCTGGCTTGCCTCTGATTCCACTCCATGCTCCTCCTGGGCAGGAGTTCAATGTGACCATGCCCACAATGTGGTCTACCTTAACCTCACAGGTTATGGGATTGCCGGTCAATTAGGACCTGAAATTGGAAATATTACTCGCCTACAGTACTTAGACCTTACTGATAACAACCTTAATGGCCAAATACCCGACGCCTTCAGAAACTTGCACAACCTCAAGTTTCTCAGCCTTTCTCAAAATCAACTGTCCGGTGAAATTCCAGATTCCTTGACTCAAATCCCTCGATTACAACTTGTTGATCTCTCTCTTAACAGTTTAAGTGGTTCCATCCCCACAGGTATAGGGAACATGACTGAGCTCTTGCAGTTGTATCTTCAGAGTAACCAGTTGTCTGGGACAATTCCCTCATCCATTGGGAACTGCAGCAAATTACAAGAATTGTTTTTGAATGGAAATCAGTTGGAGGGTATCCTGCCTCAGAGTCTAAACAATCTCAATGATCTTGCATTTCTTGATGTCGCCAGAAATAGACTTAGGGGTACCATTAATTTGGGTTCTGGCAgttgtaaaaatttacaatttttggaTCTCTCGTTCAATGAGTTTAGTGGAGGCCTTCCCTCAAGCTTGGGGAACTGCAGTGGTTTATCACAATTTGCTGCCGTGAATTGCAATTTAGTAGGGAATATTCCAACCTCCTTTGGCCTACTGACCGAGCTTTCTATTCTACACCTTCCCGAGAACCATTTATCCGGAAAAATACCTCCAGAAATTGGCAACTGCAAGTCTTTGAAACAGTTACATCTGTATTCCAATCGACTTCAGGGAAACATTCCAAATCAACTGGGAAAACTAAGTAAACTGGTGGATCTTGAATTGTTTAAAAACCAATTGACGGGTGAAATTCCACTTAGCATCTGGAAGATTAAAGGTCTTGAGCATCTCCTTGTGTATAACAATAGTCTTTCTGGGGAACTGCCTCTGGAGATGACGGAGCTCAAGCAACTGAAAAATATCTCATTGTTTAACAACCAGTTCTCCGGTGTCATACCTCAAAGCTTGGGAATCAACAGCAGTTTAGTTCTGTTGGACttcacaaataataaattcagTGGCAACATCCCACCAAATCTGTGCTTTGGCAAGAAGTTAATCATCTTGAATTTGGGCATCAATCAACTTCAAGGCAGCATACCTCCTGATGTTGGGAGCTGTACAACACTTACAAGGTTAATTCttgaacaaaataatttcaCTCGGCCTCTTCCTGATTTTAAAAGCAATCCAAATCTCGCATATATGGATATCAGCAACAACAAAATCCATGGAGCAATTCCATCAAGTTTGGGAAATTGCAGACATCTCACTGTCTTAATTTTGTCCATGAACAAATTTACAGGGCTTATACCCTCAGAGCTAGGGAACCTTGTGAATCTTCGGACTTTGAATCTCGCTCACAACAACTTAGAAGGTCCTTTGCCCTCTCAGCTGTCAAACTGTTCCAAAATGGACAGGTTTGATGTTGGATTCAATTTCCTAAATGGTTCATTGCCATCAAGTTTGCAGAGCTGGACAGGGCTAACCACACTAATTTTGAGTGAGAATCACTTTAGTGGGGGCATCCCAGCTTTCTTGTCAGAATTTAAAAACCTTTCTGAACTACAACTTGGTGGCAATATGTTTGGCAGCAAAATTCCCAGATCAGTTGGAGCACTGCAGAATTTGAGGTATGGTTTGAATCTAAGTTCAAACGGGCTGATAGGTGACATTCCTGTAGAAATTGGGAACCTGAACATGTTGCAAACACTGGATCTATCTCAGAACCATTTGACAGGAAGCATAGAAGTTCTTGGTGAACTCCTCTCATTAGTTGAAGTCaatatttcatacaattctTTTCTTGGTCATGTACCAAAGATGCTAATGAAGTTTCACATGTCATCATTTCTGGGCAATCCTGGCCTATGTATCAGTTGTTCAGCGTCTGATGGTTTGGCTTGCACTGAAAAGAGCTCTATAAAACCATGTGATAACAAATCAACTAAGCAGAAAGGCCTCAGTAAAGTTGAAATTGTGATGATAGCTCTTGGGTCCTCAATAATTGTTGTTTTGCTGATGCTGggattagtttatatttttgtttttggcagAAAAGCTAAGCAGGAAGTTCATATCTCTGTTGAAGAGAGTTCTTCACCCCTTCTTAACAAAGTCATGGAGGCTACAGAAAACCTAAATGATCGGTATATTATTGGCAGAGGAGCCCATGGAGTTGTTTATAAAGCCCTGATAGGTCCAGACAAAGCTTTTGCTGCGAAGAAGATAGGATTTACTGTGAGCAAAGGTAAGAACCTGAGCATGGTCAGAGAAATTCAAACCCTTGGAAAAATTAGGCATCGAAATCTGGTTAAATTGGAAGACTTTTGGTTGAGAAAAGATTATGGTCTAATTTTGTACAGCTACATGCCAAATGGAAGTCTTCATGATGTTTTGCATGAAAAGACACCACCACCAACCTTAGAGTGGAATGTCCGGTATAAGATAGCTGTTGGAATTGCTCATGGATTGGCTTATCTCCATTATGACTGTGATCCTCCCATAGTGCACCGAGACATCAAGCCAGGCAATATACTTCTAGACTCTGATATGGAGCCTCACATTGCTGACTTTGGTATTGCCAAACTTTTGGATCAGTCTTCTGCTTCAAATCCTTCCATTTCTGTGCGGGGTACAATTGGTTATATTGCACCAGAGAATGCTTATACAACAGCAAATAGTAGGGAGTCTGATGTATACAGTTACGGGGTAGTTTTGCTTGAGCTGATAACCAGAATGAAGGCAGCAGATCCTTCGTACATGGAGGGTACTGATGTAGTGGATTGGGTTAGGTCTGTGTGGAGGGAAACGGGagaaattaatcaaattgttGATTCAAGCCTTGCAGAGGAATTTCTAGATACCCATATAATGGAAAAAGTTACCAAAGTGCTTATGGTGGCTTTGAGATGTGCTGAGAAGGATCCACACAAGAGACCGACAATGAGAGATGTTACCAAGCAGTTAACGGATGCCAATCCACAGACAAGAAGTACAAAGGGCTAG 3222 0.4041 MRWLFFFSCLFYVVSALTSDGVTLLSLLRHWTSVPSSINTTWLASDSTPCSSWAGVQCDHAHNVVYLNLTGYGIAGQLGPEIGNITRLQYLDLTDNNLNGQIPDAFRNLHNLKFLSLSQNQLSGEIPDSLTQIPRLQLVDLSLNSLSGSIPTGIGNMTELLQLYLQSNQLSGTIPSSIGNCSKLQELFLNGNQLEGILPQSLNNLNDLAFLDVARNRLRGTINLGSGSCKNLQFLDLSFNEFSGGLPSSLGNCSGLSQFAAVNCNLVGNIPTSFGLLTELSILHLPENHLSGKIPPEIGNCKSLKQLHLYSNRLQGNIPNQLGKLSKLVDLELFKNQLTGEIPLSIWKIKGLEHLLVYNNSLSGELPLEMTELKQLKNISLFNNQFSGVIPQSLGINSSLVLLDFTNNKFSGNIPPNLCFGKKLIILNLGINQLQGSIPPDVGSCTTLTRLILEQNNFTRPLPDFKSNPNLAYMDISNNKIHGAIPSSLGNCRHLTVLILSMNKFTGLIPSELGNLVNLRTLNLAHNNLEGPLPSQLSNCSKMDRFDVGFNFLNGSLPSSLQSWTGLTTLILSENHFSGGIPAFLSEFKNLSELQLGGNMFGSKIPRSVGALQNLRYGLNLSSNGLIGDIPVEIGNLNMLQTLDLSQNHLTGSIEVLGELLSLVEVNISYNSFLGHVPKMLMKFHMSSFLGNPGLCISCSASDGLACTEKSSIKPCDNKSTKQKGLSKVEIVMIALGSSIIVVLLMLGLVYIFVFGRKAKQEVHISVEESSSPLLNKVMEATENLNDRYIIGRGAHGVVYKALIGPDKAFAAKKIGFTVSKGKNLSMVREIQTLGKIRHRNLVKLEDFWLRKDYGLILYSYMPNGSLHDVLHEKTPPPTLEWNVRYKIAVGIAHGLAYLHYDCDPPIVHRDIKPGNILLDSDMEPHIADFGIAKLLDQSSASNPSISVRGTIGYIAPENAYTTANSRESDVYSYGVVLLELITRMKAADPSYMEGTDVVDWVRSVWRETGEINQIVDSSLAEEFLDTHIMEKVTKVLMVALRCAEKDPHKRPTMRDVTKQLTDANPQTRSTKG 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0023 1073 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 93 - -
Ssu8g0023 1073 Gene3D Transferase(Phosphotransferase) domain 1 862 1072 - -
Ssu8g0023 1073 SMART serkin_6 785 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0023 1073 ProSitePatterns Serine/Threonine protein kinases active-site signature. 907 919 IPR008271 GO:0004672|GO:0006468
Ssu8g0023 1073 Gene3D Ribonuclease Inhibitor 22 131 IPR032675 -
Ssu8g0023 1073 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 84 1059 - -
Ssu8g0023 1073 SUPERFAMILY RNI-like 67 441 - -
Ssu8g0023 1073 Gene3D Ribonuclease Inhibitor 132 220 IPR032675 -
Ssu8g0023 1073 SUPERFAMILY Protein kinase-like (PK-like) 769 1061 IPR011009 -
Ssu8g0023 1073 Gene3D Ribonuclease Inhibitor 466 701 IPR032675 -
Ssu8g0023 1073 ProSiteProfiles Leucine-rich repeat profile. 639 661 IPR001611 GO:0005515
Ssu8g0023 1073 MobiDBLite consensus disorder prediction 1058 1073 - -
Ssu8g0023 1073 MobiDBLite consensus disorder prediction 1048 1073 - -
Ssu8g0023 1073 Pfam Leucine rich repeat 160 218 IPR001611 GO:0005515
Ssu8g0023 1073 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Ssu8g0023 1073 Pfam Leucine rich repeat 469 529 IPR001611 GO:0005515
Ssu8g0023 1073 SUPERFAMILY RNI-like 379 686 - -
Ssu8g0023 1073 Gene3D Phosphorylase Kinase; domain 1 755 861 - -
Ssu8g0023 1073 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 84 1059 - -
Ssu8g0023 1073 Pfam Leucine Rich Repeat 231 253 IPR001611 GO:0005515
Ssu8g0023 1073 ProSitePatterns Protein kinases ATP-binding region signature. 791 814 IPR017441 GO:0005524
Ssu8g0023 1073 SMART LRR_sd22_2 181 207 - -
Ssu8g0023 1073 SMART LRR_sd22_2 516 542 - -
Ssu8g0023 1073 SMART LRR_sd22_2 109 132 - -
Ssu8g0023 1073 SMART LRR_sd22_2 637 658 - -
Ssu8g0023 1073 SMART LRR_sd22_2 325 354 - -
Ssu8g0023 1073 SMART LRR_typ_2 109 133 IPR003591 -
Ssu8g0023 1073 SMART LRR_typ_2 157 181 IPR003591 -
Ssu8g0023 1073 SMART LRR_typ_2 85 108 IPR003591 -
Ssu8g0023 1073 SMART LRR_typ_2 637 660 IPR003591 -
Ssu8g0023 1073 SMART LRR_typ_2 182 204 IPR003591 -
Ssu8g0023 1073 SMART LRR_typ_2 229 253 IPR003591 -
Ssu8g0023 1073 SMART LRR_typ_2 277 301 IPR003591 -
Ssu8g0023 1073 SMART LRR_typ_2 516 540 IPR003591 -
Ssu8g0023 1073 SMART LRR_typ_2 588 612 IPR003591 -
Ssu8g0023 1073 Gene3D Ribonuclease Inhibitor 221 465 IPR032675 -
Ssu8g0023 1073 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 4 93 - -
Ssu8g0023 1073 ProSiteProfiles Protein kinase domain profile. 785 1068 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0023 1073 Pfam Protein kinase domain 790 1059 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0023 Ssu-Chr8 576124 579434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0023 14 1070 Receptor kinase-like Gene Family AT1G73080 52.459 0.0 1045
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu8g0023 Pkinase 2.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0023 - - gmx:100778035 1802.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0023 8 576124 579434 Ssu8g0023 8 576124 579434 ECH