Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0022 ATGGCTCACATGGAAGGCATACAGAATGTTGAAGCCGCCAGGAAGTGCTTGCAAACTAGCTTAGAAAAATCAAGTGCTATTGCTTGTGCATTAGATGAATCAGAATCAAGATTGGAGCTACTTAAGCAGAGATGTCAATCCTTGGAAGATGCACTTGGACCAACCTCATTTGTTGACATTGGAGACCATATAGACAGTGTTCTTTGCTCTGCAGCTGCGGTCCTGAGGGTATTTGAAGCAGTTCATCAGCTGGAGGAGTCTCTCTTGACGACACACCCCACCTCTGATTTATGCACCTACATCTCAAACACAAAGAAGCTTGAAGAAGCACTGAAGCTTCTCACTGATAATTGCAGTTTAGCACTTGGCTGGTTGCAGGGAATTTTTGACTTCTTACAAGACAAAACAATCACCAACGAGCGCTGCCTACTGAATGTGAGGAAATCATTGAGAATACTCCAAGAATTGAAGGTCATGCAAGAAGGTGCTCACCGTGATGGAGGCCTCCTCAGTTCTGCCTTTGACAAACTAGAGATTGAGTTCCACAGGCTTCTGATAGAGAACACTGTGCCTTTTCCTTTGGCCTCATTACCATCATCCATTGACCAGCATGCCAGCATTACCACACAAGCTTTGACAGATTCTGTAACAAGGAAGTTGCAGGCCATAGTTGAGAGATTAAGCGCAAATGACAGGCTAGACAAGTGTAAATCCATATATGTTGAAGTTCGAGGTATGAATGCTCGAACAAGTATGGAGAGTTTAGATTTGAGTCACCTTGAGATGTCAAGCACTGAATTTGAGGATTTACATGTTACTGGGAGTTACATAGACCAATGGGGCCGGCATTTGGAGCTGGCTGTGAAGCACCTGCTTGAGATCGAGTACAAGCTCTGTAGTAATgtctttgagaaaattgatcAAGAAGCATGGATGGGATGTTTTGCAAAGATTGCCATTGAAACAggaattctttcttttctccaatTTGGAAGGAACGTTGCTAGTAGTAGAAACGACCCCATCAAGTTGTTGAAGCTGCTGGACATATTCCGAGTCCTAACTGGTCTAAGACTAAAATTCAACCAACTTTTCAACGGGAAAGCTTGTGAAGAAATTAGAACTGTGACAAAGGATCTTGTGAATGGAGTTGTCAATGGTGCTGGTGAGATATTCTGGCAACTTCCAGCACAAGTAAAGTTACTAAGGCCAAGTTCTCCTCCCACAGATGGCAGCGTTCCTAGAGTGGTCAGCTTTGTAACTGATTACTGCAATCAGCTACTTGGGGATACTTACAGACCACACTTGACACAGGTTCTGGAAATCCATCTAAGCTGGAGAAAGGAAGAATATGAAGAGGGTATTGTTTTCAcccaaatttataacataattaaggaaattgcTATTAATTTGGATGCTTGGTCAAATGCCTATGAAGACATCACTTTGTCTTACctttttatgatgaataatcACTGCCATTTCTACAATTTGCGGGGTACTGCACTTGGGAATCTGATGGGAGATTCTTGGCTAAGAGCTCATGAACAATACAAGGACTATTATGCAGAACTTTATTTGAGGAATAGCTGGGAAAAGCTTCTACCTATTCTTATAGTTCGAAAAGACATGCTATCATCATCCGTGACTAGCCAAGATTTGGTCCAGAGACTAAATGCTTTCAATGTAGCTTTTGACGAAGGGTATAAGAAGCAATCCAGTTGGGCCATCACTGATGAGGTCTTGAGGGAAAATATATGCAAGCATTTGGTGGAAGGCATTGTACCAACCTATAGGGCCTACATCAAGAACTACAGCTTGTCAATCGAAAACGATGCTAAGGCTGCCacacatataaaatattcagCGCAGATTTTAGAGAACATGATTAGGTCTTTATTTCAGCCCAAGCTGAGTAAGTATGGGAGAATCAAACAAGCAGACTTGATCAGTAAATTAAAACATGTGAGCAAGCAATTTCGTTCCACTCTTAATGCACTATAA 2004 0.4027 MAHMEGIQNVEAARKCLQTSLEKSSAIACALDESESRLELLKQRCQSLEDALGPTSFVDIGDHIDSVLCSAAAVLRVFEAVHQLEESLLTTHPTSDLCTYISNTKKLEEALKLLTDNCSLALGWLQGIFDFLQDKTITNERCLLNVRKSLRILQELKVMQEGAHRDGGLLSSAFDKLEIEFHRLLIENTVPFPLASLPSSIDQHASITTQALTDSVTRKLQAIVERLSANDRLDKCKSIYVEVRGMNARTSMESLDLSHLEMSSTEFEDLHVTGSYIDQWGRHLELAVKHLLEIEYKLCSNVFEKIDQEAWMGCFAKIAIETGILSFLQFGRNVASSRNDPIKLLKLLDIFRVLTGLRLKFNQLFNGKACEEIRTVTKDLVNGVVNGAGEIFWQLPAQVKLLRPSSPPTDGSVPRVVSFVTDYCNQLLGDTYRPHLTQVLEIHLSWRKEEYEEGIVFTQIYNIIKEIAINLDAWSNAYEDITLSYLFMMNNHCHFYNLRGTALGNLMGDSWLRAHEQYKDYYAELYLRNSWEKLLPILIVRKDMLSSSVTSQDLVQRLNAFNVAFDEGYKKQSSWAITDEVLRENICKHLVEGIVPTYRAYIKNYSLSIENDAKAATHIKYSAQILENMIRSLFQPKLSKYGRIKQADLISKLKHVSKQFRSTLNAL 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0022 667 Pfam Exo70 exocyst complex subunit 279 631 IPR046364 GO:0000145|GO:0005546|GO:0006887
Ssu8g0022 667 Coils Coil 31 51 - -
Ssu8g0022 667 Gene3D Exocyst complex component Exo70 133 641 - -
Ssu8g0022 667 SUPERFAMILY Cullin repeat-like 74 634 IPR016159 -
Ssu8g0022 667 PANTHER EXOCYST COMPLEX PROTEIN EXO70 7 656 IPR004140 GO:0000145|GO:0006887
Ssu8g0022 667 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 7 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0022 Ssu-Chr8 573565 575568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0022 6 663 EXO70 exocyst subunit family AT4G31540 48.817 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0022 K07195 - gmx:121175138 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0022 8 573565 575568 Ssu8g0022 8 573565 575568 ECH