Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0020 ATGAGCAACATGACCTCCACCTCGCGTGGTTCCACCTCCTCCTCCAATGGCCTTCTCACCGTCACCATTGCCAACAGCCACCCTGACGACCCCGCCACTGACGAtaacgacgacgacgacgacttGCTCGTTGATCCCGACGATCCTTTCGATATTACACATACCAAAAATGCACCGCCGGAGACCCTCAAGCGTTGgagaCAAGCAGCTCTCGTGCTCAATGCGTCTAGGCGTTTTAGATATACTCTTGACTTGAAAAAGGACGAGGAGAAAGAGCAAAAGAAAAGCATGATTAGATCCCACGCACAAGTCATAAGAGCAGCTTTGCTTTTCAGATTGGCTGGTGAACGGGAACTAGTGACAAGTACAGCAGCAGTGGTATCTCCAGCTCCAGTTGGTGAGTATGCAGTTGGGCTCGAACAACTTGTTTCAATGGCTAAGAATCAGAATATTTCGGCTTTACAACAATATGGAGGGGTTAAAGGCTTATCAAATTTACTAAAATCAAATCCGGATAAAGGGATTAGTGGAGATGATGCTGATCTATTAAAGAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAAGGGAGAAGTTTCTGGAGGTTTCTATGGGAATCTTGGCAAGATCTGACTcttataatattgattatagCAGCGGTAGTATCATTGGTACTTGGAATAAAAACAGAGGGCTTGGAAGAAGGGTGGTACGACGGGGGAAGCATTGCTTTCGCTGTTTTTCTTGTCATTATAGTTACAGCTGGCAGTGATTATCGGCAATCTCTGCAGTTTCAGAACTTGAATgcagaaaaacaaaatataaagttaGAGGTCATTAGAGGTGGCAGAACAATACAAATATCAATATTTGATATTGTTGTTGGTGATGTAGTGCCCCTTAAAATAGGAGATCAGGTTCCTGCCGATGGAGTTTTAATCACTGGTCACTCTCTTGCCATTGATGAATCCAGTATGACTGGTGAAAGCAAAATTATTCACAAGGATCAAAAAGTACCTTTTTTGATGTCTGGTTGCAAAGTAGCAGATGGAGTTGGTGCTATGCTGGTAACCGGTGTTGGTATAAATACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCCTTACAGGTTCGTTTGAATGGAGTAGCAACTTTTGTTGGCATAGTGGGGCTTACTGTAGCTGTTTCTGTCCTTGCAGTCCTCTTGGGAAGATACTTCTCTGGCCATACAAAAGATTTAGATGAAAAAGTACAATTTGTTGCTGGACAGACTAGTGCTAGTAAAGTAGTAGATGGGGTCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTTGTTGCAGTGCCTGAAGGTCTACCTTTAGCAGTTACCTTAACCTTGGCATACTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGTGCGAAGGCTGTCAGCATGCGAAACTATGGGATCTGCTACAACAATTTGCAGTGATAAGACTGGGACTTTGACCTTAAATCAGATGACTGTAGTTGAGGCATATGTTGGGAGGAAGAAACTAAATCCACCAGATGACTTGACAAAACTGCATCCAGAAGTTCTATCTCTGATAAATGAGGGCATTGCACAAAATACAACTGGCAATGTTTTTGTGCCTAAGGATGGTGAAGAGGTGGAGGTGTCAGGATCCCCTACAGAGAAGGCAATTCTTTCTTGGGCAGTGAAGTTGGGGATGAGTTTTGATCTTATTAgatcaaattcaacaattctCCATGTCTTCCCCTTCAATTCCGAGAAAAAGCGAGGTGGTGTTGCTGTGAAACTGGTGAACTCTGCAGTACATATACATTGGAAAGGAGCTGCAGAGATAGTTCTAGGAACATGTACTCAATATCTTGATTCTGATGGTCACTTGAAATCTATTGAAGAAGAGAAGGTAATCTTCAAGAAGGCTATCGAAGACATGGCTGCTCAAAGCTTGCGTTGTGTTGCCATTGCATACAGATCGTATGATTTGGACAAAATTCCATCTAATGAGGAGGAATTAGACCAGTGGTCCTTGCCAGAACATGAGCTTGTCTTGCTTGCGATTGTTGGAATAAAGGATCCTTGTCGCCCTGGAGTCAAGGATGCTGTGAAAGTATGCACTGAAGCTGGCGTTaagGTACGCATGGTTACGGGTGACAATCTTCAAACAGCAAAAGCAATAGCTTTGGAGTGTGGAATACTGATGTCAAATGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGACATTCCGTGAACTATCTGAAAAAGAAAGGGAACaagttgtgaaaaaaataacaGTGATGGGGAGGTCTTCTCCTACTGACAAGCTGTTGCTCGTGCAAGCACTACGTAAAGGTGGTGAAGTTGTTGCTGTCACAGGAGATGGCACCAATGATGCTCCTGCGCTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACAGAAGTTGCAAAAGAAAGTTCAGATATTATAATCCTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTTCGCTGGGGCCGTTCTGTATATGCAAATATTCAGAAATTTATTCAGTTCCAGCTCACTGTTAATGTTGCTGCTcttataataaatgttgtgGCAGCAATATCTTCTGGTAATGTTCCTTTAAATGCTGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCTCTTGCACTGGCTACGGAACCACCAACAGACAGCCTTATGCACAGAACACCAGTTGGCCGAAGGGAACCTCTTATAACAAATGTCATGTGGAGGAACTTGGTCGTacagGCTCTCTATCAAGTTGCTGTTCTTCTCGTTCTTAACTTCGGTGGTGAAAGTATTCTACGTAATCAGGATTCTAAAGCCCATACCATACAAGTGAAGaatactttaattttcaatGCATTTGTCTTTTGCCAAATATTCAACGAGTTCAATGCTCGAAAACCAGATGAGATGAATGTCTTCCGGGGAGTGACCAAGAATCGTCTCTTCATGGGAATTGTTGGAATAACCTTTGTGCTTCAGATAATCATTATCGAGTTCCTTGGAAATTTCACAAAGACAGTGAGGCTTGATTGGAAGCTGTGGCTTGCCTCTCTTTGTATTGGGATTTTCAGCTGGCCTCTTGCGATAGTTGGAAAATTCATTCCTGTTCCCAAAACACCACTGTCCCGATCTTTCATGAGGTCATTCAGGAGATTGAGGAAGTCCCGAGCAGCACAATAG 3282 0.415 MSNMTSTSRGSTSSSNGLLTVTIANSHPDDPATDDNDDDDDLLVDPDDPFDITHTKNAPPETLKRWRQAALVLNASRRFRYTLDLKKDEEKEQKKSMIRSHAQVIRAALLFRLAGERELVTSTAAVVSPAPVGEYAVGLEQLVSMAKNQNISALQQYGGVKGLSNLLKSNPDKGISGDDADLLKRKNAFGTNTYPRKKGRSFWRFLWESWQDLTLIILIIAAVVSLVLGIKTEGLEEGWYDGGSIAFAVFLVIIVTAGSDYRQSLQFQNLNAEKQNIKLEVIRGGRTIQISIFDIVVGDVVPLKIGDQVPADGVLITGHSLAIDESSMTGESKIIHKDQKVPFLMSGCKVADGVGAMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFVGIVGLTVAVSVLAVLLGRYFSGHTKDLDEKVQFVAGQTSASKVVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRKKLNPPDDLTKLHPEVLSLINEGIAQNTTGNVFVPKDGEEVEVSGSPTEKAILSWAVKLGMSFDLIRSNSTILHVFPFNSEKKRGGVAVKLVNSAVHIHWKGAAEIVLGTCTQYLDSDGHLKSIEEEKVIFKKAIEDMAAQSLRCVAIAYRSYDLDKIPSNEEELDQWSLPEHELVLLAIVGIKDPCRPGVKDAVKVCTEAGVKVRMVTGDNLQTAKAIALECGILMSNEDAVEPNIIEGKTFRELSEKEREQVVKKITVMGRSSPTDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGNVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMHRTPVGRREPLITNVMWRNLVVQALYQVAVLLVLNFGGESILRNQDSKAHTIQVKNTLIFNAFVFCQIFNEFNARKPDEMNVFRGVTKNRLFMGIVGITFVLQIIIIEFLGNFTKTVRLDWKLWLASLCIGIFSWPLAIVGKFIPVPKTPLSRSFMRSFRRLRKSRAAQ 1093
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0020 1093 Pfam haloacid dehalogenase-like hydrolase 497 821 - -
Ssu8g0020 1093 SMART Cation_ATPase_N_a_2 156 230 IPR004014 -
Ssu8g0020 1093 Pfam Cation transporting ATPase, C-terminus 892 1067 IPR006068 -
Ssu8g0020 1093 SUPERFAMILY HAD-like 498 912 IPR036412 -
Ssu8g0020 1093 MobiDBLite consensus disorder prediction 32 46 - -
Ssu8g0020 1093 SFLD C1.7: P-type atpase like 482 859 - -
Ssu8g0020 1093 PRINTS P-type cation-transporting ATPase superfamily signature 500 514 - -
Ssu8g0020 1093 PRINTS P-type cation-transporting ATPase superfamily signature 722 732 - -
Ssu8g0020 1093 PRINTS P-type cation-transporting ATPase superfamily signature 807 826 - -
Ssu8g0020 1093 PRINTS P-type cation-transporting ATPase superfamily signature 324 338 - -
Ssu8g0020 1093 PRINTS P-type cation-transporting ATPase superfamily signature 700 711 - -
Ssu8g0020 1093 PRINTS P-type cation-transporting ATPase superfamily signature 831 843 - -
Ssu8g0020 1093 SUPERFAMILY Calcium ATPase, transduction domain A 277 373 IPR008250 -
Ssu8g0020 1093 Coils Coil 642 662 - -
Ssu8g0020 1093 SUPERFAMILY Calcium ATPase, transmembrane domain M 157 1070 IPR023298 -
Ssu8g0020 1093 Gene3D - 60 112 - -
Ssu8g0020 1093 Gene3D - 208 1059 - -
Ssu8g0020 1093 MobiDBLite consensus disorder prediction 47 61 - -
Ssu8g0020 1093 ProSitePatterns E1-E2 ATPases phosphorylation site. 502 508 IPR018303 -
Ssu8g0020 1093 SFLD p-type atpase 482 859 IPR044492 -
Ssu8g0020 1093 Pfam E1-E2 ATPase 276 478 - -
Ssu8g0020 1093 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 774 888 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g0020 1093 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 438 525 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu8g0020 1093 Gene3D - 510 707 IPR023299 GO:0000166
Ssu8g0020 1093 Gene3D - 497 852 IPR023214 -
Ssu8g0020 1093 MobiDBLite consensus disorder prediction 1 61 - -
Ssu8g0020 1093 PANTHER CALCIUM-TRANSPORTING ATPASE 48 1084 - -
Ssu8g0020 1093 Gene3D - 181 376 - -
Ssu8g0020 1093 PRINTS Sodium/potassium-transporting ATPase signature 243 263 - -
Ssu8g0020 1093 PRINTS Sodium/potassium-transporting ATPase signature 619 637 - -
Ssu8g0020 1093 PRINTS Sodium/potassium-transporting ATPase signature 493 514 - -
Ssu8g0020 1093 PANTHER CATION TRANSPORTING ATPASE 48 1084 - -
Ssu8g0020 1093 Coils Coil 1091 1093 - -
Ssu8g0020 1093 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 507 704 IPR023299 GO:0000166
Ssu8g0020 1093 Pfam Ca2+-ATPase N terminal autoinhibitory domain 47 90 IPR024750 GO:0005516
Ssu8g0020 1093 Pfam Cation transporter/ATPase, N-terminus 158 225 IPR004014 -
Ssu8g0020 1093 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 147 1070 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Ssu8g0020 1093 CDD P-type_ATPase_Ca_PMCA-like 182 940 - -
Ssu8g0020 1093 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu8g0020 Ssu-Chr8 513751 536746 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0020 11 1092 Primary Pumps ATPases AT3G21180 75.758 0.0 1664
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0020 K01537 - gmx:100802659 1882.84
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0020 8 513751 536746 Ssu8g0020 8 513751 536746 ECH