Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu8g0020 | ATGAGCAACATGACCTCCACCTCGCGTGGTTCCACCTCCTCCTCCAATGGCCTTCTCACCGTCACCATTGCCAACAGCCACCCTGACGACCCCGCCACTGACGAtaacgacgacgacgacgacttGCTCGTTGATCCCGACGATCCTTTCGATATTACACATACCAAAAATGCACCGCCGGAGACCCTCAAGCGTTGgagaCAAGCAGCTCTCGTGCTCAATGCGTCTAGGCGTTTTAGATATACTCTTGACTTGAAAAAGGACGAGGAGAAAGAGCAAAAGAAAAGCATGATTAGATCCCACGCACAAGTCATAAGAGCAGCTTTGCTTTTCAGATTGGCTGGTGAACGGGAACTAGTGACAAGTACAGCAGCAGTGGTATCTCCAGCTCCAGTTGGTGAGTATGCAGTTGGGCTCGAACAACTTGTTTCAATGGCTAAGAATCAGAATATTTCGGCTTTACAACAATATGGAGGGGTTAAAGGCTTATCAAATTTACTAAAATCAAATCCGGATAAAGGGATTAGTGGAGATGATGCTGATCTATTAAAGAGGAAAAATGCATTTGGAACTAATACATATCCTCGGAAAAAAGGGAGAAGTTTCTGGAGGTTTCTATGGGAATCTTGGCAAGATCTGACTcttataatattgattatagCAGCGGTAGTATCATTGGTACTTGGAATAAAAACAGAGGGCTTGGAAGAAGGGTGGTACGACGGGGGAAGCATTGCTTTCGCTGTTTTTCTTGTCATTATAGTTACAGCTGGCAGTGATTATCGGCAATCTCTGCAGTTTCAGAACTTGAATgcagaaaaacaaaatataaagttaGAGGTCATTAGAGGTGGCAGAACAATACAAATATCAATATTTGATATTGTTGTTGGTGATGTAGTGCCCCTTAAAATAGGAGATCAGGTTCCTGCCGATGGAGTTTTAATCACTGGTCACTCTCTTGCCATTGATGAATCCAGTATGACTGGTGAAAGCAAAATTATTCACAAGGATCAAAAAGTACCTTTTTTGATGTCTGGTTGCAAAGTAGCAGATGGAGTTGGTGCTATGCTGGTAACCGGTGTTGGTATAAATACTGAGTGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCCTTACAGGTTCGTTTGAATGGAGTAGCAACTTTTGTTGGCATAGTGGGGCTTACTGTAGCTGTTTCTGTCCTTGCAGTCCTCTTGGGAAGATACTTCTCTGGCCATACAAAAGATTTAGATGAAAAAGTACAATTTGTTGCTGGACAGACTAGTGCTAGTAAAGTAGTAGATGGGGTCATCAAAATTTTTACCATTGCAGTAACAATTGTGGTTGTTGCAGTGCCTGAAGGTCTACCTTTAGCAGTTACCTTAACCTTGGCATACTCAATGCGGAAAATGATGGCAGACAAAGCCTTGGTGCGAAGGCTGTCAGCATGCGAAACTATGGGATCTGCTACAACAATTTGCAGTGATAAGACTGGGACTTTGACCTTAAATCAGATGACTGTAGTTGAGGCATATGTTGGGAGGAAGAAACTAAATCCACCAGATGACTTGACAAAACTGCATCCAGAAGTTCTATCTCTGATAAATGAGGGCATTGCACAAAATACAACTGGCAATGTTTTTGTGCCTAAGGATGGTGAAGAGGTGGAGGTGTCAGGATCCCCTACAGAGAAGGCAATTCTTTCTTGGGCAGTGAAGTTGGGGATGAGTTTTGATCTTATTAgatcaaattcaacaattctCCATGTCTTCCCCTTCAATTCCGAGAAAAAGCGAGGTGGTGTTGCTGTGAAACTGGTGAACTCTGCAGTACATATACATTGGAAAGGAGCTGCAGAGATAGTTCTAGGAACATGTACTCAATATCTTGATTCTGATGGTCACTTGAAATCTATTGAAGAAGAGAAGGTAATCTTCAAGAAGGCTATCGAAGACATGGCTGCTCAAAGCTTGCGTTGTGTTGCCATTGCATACAGATCGTATGATTTGGACAAAATTCCATCTAATGAGGAGGAATTAGACCAGTGGTCCTTGCCAGAACATGAGCTTGTCTTGCTTGCGATTGTTGGAATAAAGGATCCTTGTCGCCCTGGAGTCAAGGATGCTGTGAAAGTATGCACTGAAGCTGGCGTTaagGTACGCATGGTTACGGGTGACAATCTTCAAACAGCAAAAGCAATAGCTTTGGAGTGTGGAATACTGATGTCAAATGAAGATGCTGTTGAGCCAAATATAATTGAAGGAAAGACATTCCGTGAACTATCTGAAAAAGAAAGGGAACaagttgtgaaaaaaataacaGTGATGGGGAGGTCTTCTCCTACTGACAAGCTGTTGCTCGTGCAAGCACTACGTAAAGGTGGTGAAGTTGTTGCTGTCACAGGAGATGGCACCAATGATGCTCCTGCGCTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACAGAAGTTGCAAAAGAAAGTTCAGATATTATAATCCTGGATGATAACTTTGCATCAGTAGTAAAGGTTGTTCGCTGGGGCCGTTCTGTATATGCAAATATTCAGAAATTTATTCAGTTCCAGCTCACTGTTAATGTTGCTGCTcttataataaatgttgtgGCAGCAATATCTTCTGGTAATGTTCCTTTAAATGCTGTACAGCTTTTGTGGGTCAACCTTATCATGGACACACTTGGGGCTCTTGCACTGGCTACGGAACCACCAACAGACAGCCTTATGCACAGAACACCAGTTGGCCGAAGGGAACCTCTTATAACAAATGTCATGTGGAGGAACTTGGTCGTacagGCTCTCTATCAAGTTGCTGTTCTTCTCGTTCTTAACTTCGGTGGTGAAAGTATTCTACGTAATCAGGATTCTAAAGCCCATACCATACAAGTGAAGaatactttaattttcaatGCATTTGTCTTTTGCCAAATATTCAACGAGTTCAATGCTCGAAAACCAGATGAGATGAATGTCTTCCGGGGAGTGACCAAGAATCGTCTCTTCATGGGAATTGTTGGAATAACCTTTGTGCTTCAGATAATCATTATCGAGTTCCTTGGAAATTTCACAAAGACAGTGAGGCTTGATTGGAAGCTGTGGCTTGCCTCTCTTTGTATTGGGATTTTCAGCTGGCCTCTTGCGATAGTTGGAAAATTCATTCCTGTTCCCAAAACACCACTGTCCCGATCTTTCATGAGGTCATTCAGGAGATTGAGGAAGTCCCGAGCAGCACAATAG | 3282 | 0.415 | MSNMTSTSRGSTSSSNGLLTVTIANSHPDDPATDDNDDDDDLLVDPDDPFDITHTKNAPPETLKRWRQAALVLNASRRFRYTLDLKKDEEKEQKKSMIRSHAQVIRAALLFRLAGERELVTSTAAVVSPAPVGEYAVGLEQLVSMAKNQNISALQQYGGVKGLSNLLKSNPDKGISGDDADLLKRKNAFGTNTYPRKKGRSFWRFLWESWQDLTLIILIIAAVVSLVLGIKTEGLEEGWYDGGSIAFAVFLVIIVTAGSDYRQSLQFQNLNAEKQNIKLEVIRGGRTIQISIFDIVVGDVVPLKIGDQVPADGVLITGHSLAIDESSMTGESKIIHKDQKVPFLMSGCKVADGVGAMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFVGIVGLTVAVSVLAVLLGRYFSGHTKDLDEKVQFVAGQTSASKVVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYVGRKKLNPPDDLTKLHPEVLSLINEGIAQNTTGNVFVPKDGEEVEVSGSPTEKAILSWAVKLGMSFDLIRSNSTILHVFPFNSEKKRGGVAVKLVNSAVHIHWKGAAEIVLGTCTQYLDSDGHLKSIEEEKVIFKKAIEDMAAQSLRCVAIAYRSYDLDKIPSNEEELDQWSLPEHELVLLAIVGIKDPCRPGVKDAVKVCTEAGVKVRMVTGDNLQTAKAIALECGILMSNEDAVEPNIIEGKTFRELSEKEREQVVKKITVMGRSSPTDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGNVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMHRTPVGRREPLITNVMWRNLVVQALYQVAVLLVLNFGGESILRNQDSKAHTIQVKNTLIFNAFVFCQIFNEFNARKPDEMNVFRGVTKNRLFMGIVGITFVLQIIIIEFLGNFTKTVRLDWKLWLASLCIGIFSWPLAIVGKFIPVPKTPLSRSFMRSFRRLRKSRAAQ | 1093 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu8g0020 | 1093 | Pfam | haloacid dehalogenase-like hydrolase | 497 | 821 | - | - | |
Ssu8g0020 | 1093 | SMART | Cation_ATPase_N_a_2 | 156 | 230 | IPR004014 | - | |
Ssu8g0020 | 1093 | Pfam | Cation transporting ATPase, C-terminus | 892 | 1067 | IPR006068 | - | |
Ssu8g0020 | 1093 | SUPERFAMILY | HAD-like | 498 | 912 | IPR036412 | - | |
Ssu8g0020 | 1093 | MobiDBLite | consensus disorder prediction | 32 | 46 | - | - | |
Ssu8g0020 | 1093 | SFLD | C1.7: P-type atpase like | 482 | 859 | - | - | |
Ssu8g0020 | 1093 | PRINTS | P-type cation-transporting ATPase superfamily signature | 500 | 514 | - | - | |
Ssu8g0020 | 1093 | PRINTS | P-type cation-transporting ATPase superfamily signature | 722 | 732 | - | - | |
Ssu8g0020 | 1093 | PRINTS | P-type cation-transporting ATPase superfamily signature | 807 | 826 | - | - | |
Ssu8g0020 | 1093 | PRINTS | P-type cation-transporting ATPase superfamily signature | 324 | 338 | - | - | |
Ssu8g0020 | 1093 | PRINTS | P-type cation-transporting ATPase superfamily signature | 700 | 711 | - | - | |
Ssu8g0020 | 1093 | PRINTS | P-type cation-transporting ATPase superfamily signature | 831 | 843 | - | - | |
Ssu8g0020 | 1093 | SUPERFAMILY | Calcium ATPase, transduction domain A | 277 | 373 | IPR008250 | - | |
Ssu8g0020 | 1093 | Coils | Coil | 642 | 662 | - | - | |
Ssu8g0020 | 1093 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 157 | 1070 | IPR023298 | - | |
Ssu8g0020 | 1093 | Gene3D | - | 60 | 112 | - | - | |
Ssu8g0020 | 1093 | Gene3D | - | 208 | 1059 | - | - | |
Ssu8g0020 | 1093 | MobiDBLite | consensus disorder prediction | 47 | 61 | - | - | |
Ssu8g0020 | 1093 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 502 | 508 | IPR018303 | - | |
Ssu8g0020 | 1093 | SFLD | p-type atpase | 482 | 859 | IPR044492 | - | |
Ssu8g0020 | 1093 | Pfam | E1-E2 ATPase | 276 | 478 | - | - | |
Ssu8g0020 | 1093 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 774 | 888 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Ssu8g0020 | 1093 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 438 | 525 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Ssu8g0020 | 1093 | Gene3D | - | 510 | 707 | IPR023299 | GO:0000166 | |
Ssu8g0020 | 1093 | Gene3D | - | 497 | 852 | IPR023214 | - | |
Ssu8g0020 | 1093 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - | |
Ssu8g0020 | 1093 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 48 | 1084 | - | - | |
Ssu8g0020 | 1093 | Gene3D | - | 181 | 376 | - | - | |
Ssu8g0020 | 1093 | PRINTS | Sodium/potassium-transporting ATPase signature | 243 | 263 | - | - | |
Ssu8g0020 | 1093 | PRINTS | Sodium/potassium-transporting ATPase signature | 619 | 637 | - | - | |
Ssu8g0020 | 1093 | PRINTS | Sodium/potassium-transporting ATPase signature | 493 | 514 | - | - | |
Ssu8g0020 | 1093 | PANTHER | CATION TRANSPORTING ATPASE | 48 | 1084 | - | - | |
Ssu8g0020 | 1093 | Coils | Coil | 1091 | 1093 | - | - | |
Ssu8g0020 | 1093 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 507 | 704 | IPR023299 | GO:0000166 | |
Ssu8g0020 | 1093 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 47 | 90 | IPR024750 | GO:0005516 | |
Ssu8g0020 | 1093 | Pfam | Cation transporter/ATPase, N-terminus | 158 | 225 | IPR004014 | - | |
Ssu8g0020 | 1093 | TIGRFAM | ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type | 147 | 1070 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
Ssu8g0020 | 1093 | CDD | P-type_ATPase_Ca_PMCA-like | 182 | 940 | - | - | |
Ssu8g0020 | 1093 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu8g0020 | Ssu-Chr8 | 513751 | 536746 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu8g0020 | 11 | 1092 | Primary Pumps ATPases | AT3G21180 | 75.758 | 0.0 | 1664 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu8g0020 | K01537 | - | gmx:100802659 | 1882.84 |