Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu8g0018 | ATGCAATTAGCGTCAAATGGTGACAaggaagaatgttcagaaagcGAACCCATCTTGAATCAGCATCTTCATTTGCAACCATCTAGAGAATCCTCCTTTTCCTGTGAAATTATTCCTATTCCTGCTGCTCCcaacgacgacgacgacgacgatgaTTTACAAAACGTTCGGGTTGATGAGACTTGTCGTCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCCCCATGCCATTGCAAAGGTACGCAAAAGTACGTCCACAGATCATGCCTCGATAATTGGAGATCCACCAAGGAGGGCTTCGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGtggttgagattaaaatttCAGTTCCTTGTTGCTAGGGATCATGcattcattttcataattgttCAACTGGTATGGAGTTGGTTATCTCATTTATGTATTGTGGAATTGGTACTCATAACTCGTGCTGATGACATTACTTTTGCCCTTTCATTCCCTTTTCGTTTTCTGCTGGTTCACATGAACCATCCTATTtgtattcatcattttttttttccgctGGTTGACATGAGCCATCCTATTTGTGTTCATCATTCCCCTGTGTAG | 666 | 0.3664 | MQLASNGDKEECSESEPILNQHLHLQPSRESSFSCEIIPIPAAPNDDDDDDDLQNVRVDETCRLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVWSWLSHLCIVELVLITRADDITFALSFPFRFLLVHMNHPICIHHFFFPLVDMSHPICVHHSPV | 221 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu8g0018 | 221 | SMART | ringv_2 | 71 | 120 | IPR011016 | GO:0008270 | |
Ssu8g0018 | 221 | Pfam | RING-variant domain | 72 | 119 | IPR011016 | GO:0008270 | |
Ssu8g0018 | 221 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 64 | 126 | IPR011016 | GO:0008270 | |
Ssu8g0018 | 221 | SUPERFAMILY | RING/U-box | 67 | 123 | - | - | |
Ssu8g0018 | 221 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 65 | 124 | IPR013083 | - | |
Ssu8g0018 | 221 | CDD | RING_CH-C4HC3_MARCH | 72 | 120 | - | - | |
Ssu8g0018 | 221 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 2 | 165 | - | - | |
Ssu8g0018 | 221 | PANTHER | OS02G0132300 PROTEIN | 2 | 165 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu8g0018 | Ssu-Chr8 | 465701 | 466726 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu8g0018 | 30 | 165 | C3H Transcription Factor Family | AT1G50440 | 66.667 | 5.71e-62 | 191 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu8g0018 | - | - | gmx:100789593 | 289.656 |