Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0018 ATGCAATTAGCGTCAAATGGTGACAaggaagaatgttcagaaagcGAACCCATCTTGAATCAGCATCTTCATTTGCAACCATCTAGAGAATCCTCCTTTTCCTGTGAAATTATTCCTATTCCTGCTGCTCCcaacgacgacgacgacgacgatgaTTTACAAAACGTTCGGGTTGATGAGACTTGTCGTCTCGTAAATGCAGATCAGCCACAATGCCGAATATGCCTCGATATTGGAGGAGAAGATTTAATTGCCCCATGCCATTGCAAAGGTACGCAAAAGTACGTCCACAGATCATGCCTCGATAATTGGAGATCCACCAAGGAGGGCTTCGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTACGTGCAAATGTCCCACCAGATCGGTGGtggttgagattaaaatttCAGTTCCTTGTTGCTAGGGATCATGcattcattttcataattgttCAACTGGTATGGAGTTGGTTATCTCATTTATGTATTGTGGAATTGGTACTCATAACTCGTGCTGATGACATTACTTTTGCCCTTTCATTCCCTTTTCGTTTTCTGCTGGTTCACATGAACCATCCTATTtgtattcatcattttttttttccgctGGTTGACATGAGCCATCCTATTTGTGTTCATCATTCCCCTGTGTAG 666 0.3664 MQLASNGDKEECSESEPILNQHLHLQPSRESSFSCEIIPIPAAPNDDDDDDDLQNVRVDETCRLVNADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVWSWLSHLCIVELVLITRADDITFALSFPFRFLLVHMNHPICIHHFFFPLVDMSHPICVHHSPV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0018 221 SMART ringv_2 71 120 IPR011016 GO:0008270
Ssu8g0018 221 Pfam RING-variant domain 72 119 IPR011016 GO:0008270
Ssu8g0018 221 ProSiteProfiles Zinc finger RING-CH-type profile. 64 126 IPR011016 GO:0008270
Ssu8g0018 221 SUPERFAMILY RING/U-box 67 123 - -
Ssu8g0018 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 124 IPR013083 -
Ssu8g0018 221 CDD RING_CH-C4HC3_MARCH 72 120 - -
Ssu8g0018 221 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 165 - -
Ssu8g0018 221 PANTHER OS02G0132300 PROTEIN 2 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0018 Ssu-Chr8 465701 466726 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0018 30 165 C3H Transcription Factor Family AT1G50440 66.667 5.71e-62 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0018 - - gmx:100789593 289.656