Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0014 ATGCCAGCGGTTTACGGAGCTCGCTTGACCACCTTCGAAGACTCCGAGAAGGAGAGTGAGTACGGTTACGTTCGTAAGGTTTCGGGACCAGTTGTGGTTGCTGATGGCATGGCTGGGGCCGCTATGTATGAACTTGTACGTGTTGGTCGTGATAATCTCATTGGGGAAATTATTCGTTTGGAAGGGGATTCGGCTACCATCCAAGtttatgaggAAACGGCTGGTCTAATGGTTAATGACCCTGTCTTACGTACACACAAGCCTTTGTCTGTGGAGTTGGGCCCTGGAATACTAGGGAATATTTTTGATGGCATTCAGAGGCCTTTGAAAACTATTGCTAAAAGATCAGGTGATGTCTATATTCCTCGTGGTGTATCTGTTCCAGCACTTGACAAAGATACACTATGGAAGTTTCAGcctaaaaaaattgGTGAAGGAGACCTATTGACTGGTGGAGATCTATATGCTACTGTTTTTGAGAACAGTCTAATGCAACACCATATTGCTCTTCCTCCTGACGCAATGGGAATAATTACTTACATTGCACCACCTGGTCAATATTCCTTGAAGGATACTGTGTTGGAGCTTGAGTTTCAAGGTGTCAAAAAAATTCACCATGCTTCAGCTGATACTCCTCTTCTTACTGGTCAGTGTGTACTTGATGCTCTTTTCCCCTCAGTTCTCGGTGGGACTTGTGCTATACCTGGAGCTTTTGGTTGTGGTAAAACTGTCATTAGTCAGGCCCTTTCTAAGTATTCAAACTCAGATGCAGTTGTTTATGTTGGCTGTGGGGAACGTGGAAATGAAATGGCagagGTTCTAATGGACTTTCCACAACTTACAATGACATTGCCTGACGGTCATGAAGAATCTGTCATGAAGCGTACAACACTAGTAGCTAACACTTCAAACATGCCAGTGGCTGCTCGTGAAGCTTCAATTTATACAGGAATCACTTTAGCGGAGTATTTTAGAGACATGGGTTACAATGTCAGCATGATGGCAGATTCAACATCTAGATGGGCAGAAGCATTGCGTGAAATCTCTGGACGGCTGGTTTTCTGGGGTTGGACAAAAAGCTCGCTCAGAGGAAGCATTTTCCTTCTGACAAAGGCTCGTGAAGTGCTGCAAAGAGAAGATGACCTGAATGAAATTGTCCAGGTTAATGAAATGTCATCACATGCTCTACTAGGAAGGGATAGAAAATTGTTGAGCTTGAATCTATGTAGTGGAGGAGGGTGGCTAAATGGCCAGGCAGTAGAGAGGGGAGCTAGTACAGATGGTCAGAAGATAACTTACAGCCTCATCAAGCATCGTCTGGGAGATCTCTTCTATTGTTTAGTGTCTCAGAAATTTGAGGATCCAGCAGAAGGTGAAGCGGTTTTGGTTACCAAATTTAAGAAGCTACATGAGGACCTGACTAATGGTTTCCGCAACCTTGAGGATGAAACCCGATGA 1458 0.4369 MPAVYGARLTTFEDSEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGRDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVSVPALDKDTLWKFQPKKIGEGDLLTGGDLYATVFENSLMQHHIALPPDAMGIITYIAPPGQYSLKDTVLELEFQGVKKIHHASADTPLLTGQCVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDAVVYVGCGERGNEMAEVLMDFPQLTMTLPDGHEESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLVFWGWTKSSLRGSIFLLTKAREVLQREDDLNEIVQVNEMSSHALLGRDRKLLSLNLCSGGGWLNGQAVERGASTDGQKITYSLIKHRLGDLFYCLVSQKFEDPAEGEAVLVTKFKKLHEDLTNGFRNLEDETR 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0014 485 Gene3D - 135 194 - -
Ssu8g0014 485 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034|GO:1902600
Ssu8g0014 485 Gene3D - 195 354 IPR027417 -
Ssu8g0014 485 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 367 390 IPR022878 GO:0046034|GO:0046961
Ssu8g0014 485 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 353 IPR022878 GO:0046034|GO:0046961
Ssu8g0014 485 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 415 484 IPR022878 GO:0046034|GO:0046961
Ssu8g0014 485 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 353 - -
Ssu8g0014 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 352 IPR027417 -
Ssu8g0014 485 Gene3D - 20 89 IPR023366 -
Ssu8g0014 485 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Ssu8g0014 485 Pfam ATPsynthase alpha/beta subunit N-term extension 102 203 IPR031686 -
Ssu8g0014 485 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 367 390 - -
Ssu8g0014 485 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 415 484 - -
Ssu8g0014 485 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 216 352 IPR000194 GO:0005524
Ssu8g0014 485 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
Ssu8g0014 485 CDD V_A-ATPase_A 88 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0014 Ssu-Chr8 406055 416505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0014 366 485 Primary Pumps ATPases(2) AT1G78900 54.000 2.90e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0014 K02145 - gmx:100775727 659.062