Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0011 ATGTTGGttaaaattcacacaaattGGTTTGTCCCAGTTGCAGTTCCAGTTGCGTTCCCATTTCCACACAAGATTGAGGCTTGTTTTGTGTCGAGTAAGTGCGTGTTATTCACGCATCTATTTGAAGTGGATAATGATAAATcaagaagaggaggaggaggaagaagaagatcaaATTGGCATTGGCGTTGTGGTTCGGGGGAGGCACAGGCACTCTCTGAATGGGAAGTGCAGGAAGCTCGTACGGCTGTTTCAACTTATCTTCGAGAATTGGGGGTGTCGGAGGAGGATTCGGTGTCCATCGCGTCAAAGTCACCCGGTTATGTGAAGATGTTGGTGGAAGGTGTGAGGGATTTGGAGCAGTGCCAGTGGGATGAAGATGAACAAATTGCGGGGGGCTTCAGCTTCAAGGACAAGATTCTTCATATCGCCGCTCAAAAAGGCGACAAGGGGGGGAAAGTTGCTTACTTAGAGACTCTGGGCTTCACTCTCTCTTCGTCCATGAATGTGGCCAGATATCTCTCCGCTGACACCCTCCCATCTCTCATGCACAAGGTTACGCGTATGAAGCAACTCTTCTTTTCTGCCCATGAAAACTTGTACTACCACTTGCTTATCAAACATATTCGCCTCATGATGCGCCACTTATCTATTTCAATTGACGAAGATCTGCAACACACTTTGTCCTTCTTCGAAAAGCTTGAAGCAAGGCGTGGTGGTCTAAACATTTTGGCTTCCAAAGATGCCGCTTACCATAACTTAATCGAATCATTTCCTCGTCTACTTCAGTTATCAGTAGACAACCACTTCACACCCATACTGGATTTTCTCCACAGTATTGGAATCCCCACATTTCGCATCTCGAACATAATTCTGgcttttcctcctcttctcttctGGAATCTTCAACTCCTTAAAATTAGAGTCCTGGCCTTAAAGGAGattGATGCGGCTGATAAAGATTATGCTAAGTTGTTGCTAAAATATCCTTGGGTTCTATCTACAAGTATTCAACAGAATTATACGCAGGTTTCAAAGACATGGATAGATCGTGCAATTGAAAGCCACCCTCATCTATTGAGTTGTTCAACTAGCAAGCTGAAGTTGATGGTGGATCAGTTTGCTGAGCTAGGAGTTCgaaacaaaaagttaaatcaagTTATTGCTAAAAGTCCTCAATTACTATTACGAAAGCCCAGAGACTTTCTACAgATTGTTCTGTTGTTTGAAAATATGGATTTTGATAAAGAAACTATTGGAAGAATACTTGCTCGCTGCCCTGAAATTTTTGCCGCCAGCATTAATAAAACTCTACAGAGGAAGATTGAGTTCCTTGGTAGGGTTGGTGTTTCTAAAATTTTCCTTCCTGGAGTTATCAGAAAGTATCCAGAATTACTTGTTTCTGACATTGACAAAACTTTACTACAAAGGATAATGTACTTGATGAAGTTAGGGCTTTCAGAGGAAGACATTGCATATATGGTACGTACATTTTCTCCTCTCCTTGGGTACAGTATAGAGGGGGTTCTTAGGCCAAAAATAGAATTCCTTGTGAGCTCAATGGAGAGGCCAGTAAGTGATGTGGTGGGCTACCCTAGGTATTTTAGCTATTCACTAGAGAAGAAGATAAAGCCAAGATTTTGGGTGTTGAAAGGAAGGGATATCAACTGTAGCTTAAAGGATATGCTGGGAAAAAATGATGAAGAATTTGCTGCTGAATTTATGGGTATCGGAAGGATTCTCGGCTGTCCTCCTGTGTCTTCTAATGATAGCccgtaa 1779 0.4019 MLVKIHTNWFVPVAVPVAFPFPHKIEACFVSSKCVLFTHLFEVDNDKSRRGGGGRRRSNWHWRCGSGEAQALSEWEVQEARTAVSTYLRELGVSEEDSVSIASKSPGYVKMLVEGVRDLEQCQWDEDEQIAGGFSFKDKILHIAAQKGDKGGKVAYLETLGFTLSSSMNVARYLSADTLPSLMHKVTRMKQLFFSAHENLYYHLLIKHIRLMMRHLSISIDEDLQHTLSFFEKLEARRGGLNILASKDAAYHNLIESFPRLLQLSVDNHFTPILDFLHSIGIPTFRISNIILAFPPLLFWNLQLLKIRVLALKEIDAADKDYAKLLLKYPWVLSTSIQQNYTQVSKTWIDRAIESHPHLLSCSTSKLKLMVDQFAELGVRNKKLNQVIAKSPQLLLRKPRDFLQIVLLFENMDFDKETIGRILARCPEIFAASINKTLQRKIEFLGRVGVSKIFLPGVIRKYPELLVSDIDKTLLQRIMYLMKLGLSEEDIAYMVRTFSPLLGYSIEGVLRPKIEFLVSSMERPVSDVVGYPRYFSYSLEKKIKPRFWVLKGRDINCSLKDMLGKNDEEFAAEFMGIGRILGCPPVSSNDSP 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0011 592 Gene3D Transcription termination factor 3, mitochondrial 240 342 IPR038538 -
Ssu8g0011 592 Gene3D Transcription termination factor 3, mitochondrial 343 578 IPR038538 -
Ssu8g0011 592 PANTHER CGI-12 PROTEIN-RELATED 81 578 IPR003690 GO:0003690|GO:0006355
Ssu8g0011 592 PANTHER TRANSCRIPTION TERMINATION FACTOR 4, MITOCHONDRIAL 81 578 - -
Ssu8g0011 592 Pfam mTERF 274 571 IPR003690 GO:0003690|GO:0006355
Ssu8g0011 592 SMART mt_12 288 318 IPR003690 GO:0003690|GO:0006355
Ssu8g0011 592 SMART mt_12 525 556 IPR003690 GO:0003690|GO:0006355
Ssu8g0011 592 SMART mt_12 252 283 IPR003690 GO:0003690|GO:0006355
Ssu8g0011 592 SMART mt_12 456 487 IPR003690 GO:0003690|GO:0006355
Ssu8g0011 592 SMART mt_12 420 451 IPR003690 GO:0003690|GO:0006355
Ssu8g0011 592 SMART mt_12 385 415 IPR003690 GO:0003690|GO:0006355
Ssu8g0011 592 SMART mt_12 492 524 IPR003690 GO:0003690|GO:0006355
Ssu8g0011 592 SMART mt_12 350 380 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Ssu8g0011 mTERF 5.7e-87 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0011 K15032 - gmx:100802127 885.174