Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0010 ATGAGTGGAATGTCATGCGTGGACTTCGCAGAATCAGATACAGATATATCATTTGTAAGCTCCGAGAGGCCAAGCAGTGGACGTTCATCCTCAGTTTATGACTATATTGACGCAGGCCGAACTTCACGACTTTCTACCAGTTCAGATCATAGCTTTGGATCAACCCGATTGGGACTCAAGTTCAATGACCCCACTTCACCAGTAGAACATGAAAGCAGTAGAACATCATTTTCATATTCATCACAGAGCATGGATGAAGCAGAAGCTGATATGAGGAGGCTGAAGCTTGAGTTAAAGCAAACGATGGAAATGTACAGTACAGCATGTAGAGAAGCACTTACAGCGCAGCAAAAGTTAATGGAGTTGACCAACTGGAGAattgaggaagaaaaaaaattagaagaggCACGATTGGCTCAGGAAGCTGCACTGGCAATTGCAGAGAAAGAGAAAGCAAGATGTAGAGCAGCCATGGAAACTGCTGAAGCATCTAAGAAAATTGCAGATGTGGAATCACATAGAAGAGTGAGTGTTGAAGTTAAAGCTCTTAAAGAAGCAGAGGAAATGAGGAAACTATTGGACAATCTAGCCCAAACTGATGTAAGATATAGGAGATACAGTATAGAGGAGATTGAAGTAGCCACAAACTTCTTTTCTGAATCCCAGAGAATCGGGGAAGGAGGTTATGGCCCTGTTTATAAATGTTACCTTGATCACACTCCAGTTGCTGTCAAGGTTCTACGTCCAGATGCTGCTCAAGGGAAGTCACAGTTTCAGCAAGAGATTGACATACTCAGCTGTATGCGACACCCAAACATGGTGCTTCTTCTAGGAGCTTGTCCGGAGTATGGCATATTGATTTATGAATATATGGCTAATGGAAGCTTGGAAGATTGTCTGtttcaaaaaaagaatagtGTTCTGTCTTGGCAGCTGAGGTTCCGAATTGCTGCAGAGATAGCGACGGGCCTACTGTTCCTGCATCAGACCAAGCCTGAACCTTTAGTGCACCGTGATCTAAAACCAGGCAACATTTTGCTAGATCAGAATTATGTGAGTAAGATAAGCGATGTTGGATTGGCAAGGCTTGTCCCAGCTGTAGCTGAAAATGTAACACAATGCCGCATGACATCAGCAGCTGGAACATTTTGTTATATTGATCCTGAGTATCAGCAAACAGGAATGCTTGGTGTGAAGTCAGATGTTTATTCTCTGGGAATCATATTTCTTCAATTATTGACAGGCAGGTCTCCAATGGGATTGGCTCACCATGCTGGAGAGTCTATAGAGAAGGACACGTTTGTGGAAATGCTGGACCCCTCTGTCACCGACTGGCCTCTTGAACAAGCCTTGTGCCTTGCAAACATAGCGGTCAAGTGTGCGGAACTCAGGCGAAAAGATAGGCCAGACCTTGCCAAAGTAGTGTTGCCGGAGCTGGATAAATTGAGAGACTTTGCCGAAGAAAAGATGACGATGCCCATCTTTTTAGGATGCACTGCACCTTCACCCAGCCACAGTGAAGCTTCCGTGCAACAGGATGTGATGAGCGACCCGCGGCTTGTACATTCGGGAAGCTCATCAGCTCCGTCAACGCCCACAGAAGGAAaaccttaa 1614 0.4393 MSGMSCVDFAESDTDISFVSSERPSSGRSSSVYDYIDAGRTSRLSTSSDHSFGSTRLGLKFNDPTSPVEHESSRTSFSYSSQSMDEAEADMRRLKLELKQTMEMYSTACREALTAQQKLMELTNWRIEEEKKLEEARLAQEAALAIAEKEKARCRAAMETAEASKKIADVESHRRVSVEVKALKEAEEMRKLLDNLAQTDVRYRRYSIEEIEVATNFFSESQRIGEGGYGPVYKCYLDHTPVAVKVLRPDAAQGKSQFQQEIDILSCMRHPNMVLLLGACPEYGILIYEYMANGSLEDCLFQKKNSVLSWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDQNYVSKISDVGLARLVPAVAENVTQCRMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQLLTGRSPMGLAHHAGESIEKDTFVEMLDPSVTDWPLEQALCLANIAVKCAELRRKDRPDLAKVVLPELDKLRDFAEEKMTMPIFLGCTAPSPSHSEASVQQDVMSDPRLVHSGSSSAPSTPTEGKP 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0010 537 Gene3D Transferase(Phosphotransferase) domain 1 291 493 - -
Ssu8g0010 537 Pfam Protein kinase domain 219 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0010 537 ProSiteProfiles Protein kinase domain profile. 218 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0010 537 MobiDBLite consensus disorder prediction 42 84 - -
Ssu8g0010 537 Coils Coil 84 104 - -
Ssu8g0010 537 MobiDBLite consensus disorder prediction 502 537 - -
Ssu8g0010 537 PANTHER BNAA05G18880D PROTEIN 39 519 - -
Ssu8g0010 537 SUPERFAMILY Protein kinase-like (PK-like) 201 475 IPR011009 -
Ssu8g0010 537 PANTHER OS02G0152300 PROTEIN 39 519 - -
Ssu8g0010 537 Coils Coil 130 164 - -
Ssu8g0010 537 Gene3D Phosphorylase Kinase; domain 1 173 290 - -
Ssu8g0010 537 SMART serkin_6 218 486 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu8g0010 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0010 Ssu-Chr8 272950 275630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0010 13 510 Receptor kinase-like Gene Family AT1G78940 64.484 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu8g0010 Pkinase 1.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0010 - - gmx:100801601 888.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0010 8 272950 275630 Ssu4g3583 4 86900647 86905105 PCT