Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0007 ATGTCACATGAGCAGCATCTCCCCATGGATTTTCATCAAAGAATATCTGGGCAAGACGAAGCTCAATGCAATAATTTATCATCAGATGGATCTATTATTGGTCAAGCTGTTGCTTCTAGAAGCTCAACTGAGCTTCTAGACTCAAGCAGTACTATAAAGAAGGCACACAGGAATCAACAGAGGtggcttttatttttacttcatgCTCGACGCTGTTCTGCCCCAGAAGGGCGATGCCAAGAACGCCATTGTTCTAGTGCACAAAAGTTATGTAATCACATAGACGGATGCACTATACCTAATTGTCCATATCCTCGTTGTCATCATACCAGGAAATTGCTTCATCATTTCATAAAATGCAAGAATCCACATTGCCCTGTTTGTGTTTTGGTAAGAAACTATCGGCATGCATTTCAACTTAAGCACCGAATTCGGCCAGATCCTGAATCATGTTTGCCAAATGGATCCTGCGAATCCTATAATAATGTGGTGGGCTCATCACCTAGATTGATCTCAAAGTCTCCACTAGTGGTTGAAACTTCAGAAGTTCTACCATCTCTGAAACGTATGAAAACTGAGCAGTGCACCCAGTCCATTAATCCTGAATATGACAATTCTGCTTCATCCGTTCTTCCAAATTGTGAATCACAAGATTCAAAGGATACTCAGTGCCAAGCCAATCCCTGTGGTGACATGTCTATATCAGCTAAATCTGAGTTTACTGAAATTAAAACAGAAGTTCTGGTGCATTCAATTCATGAAAATCTTAGTGAGACAAAAATGGACGAGGATAATGCCCATGATAAAAGGCCCACTGGTAAGCCTGCCACATATAATGAGCCCCCTAACATAGCTAGGCCAGACAATATTAAACCTGAGAAAGAAACTGGACAAGATAAGCAAGAAAATGTGACCCAGCCACCTGAACATGCAGCTGGAACCAAGTCTGGTAAGCCAAAAATAAAGGGGGTCTCAATGACTGAACTGTTTACTCCTGAGCAAGTCAAGGAACATATCATTGGCCTCAGGCAATGGGTTGGCCAAAGCAAATCAAAAGCAGAGAAGAATCAAGCAATGGAGCATTCAATGAGTGAGAACTCCTGTCAATTGTGTGCTGTAGAGAAACTTACTTTTGAACCTCCACCTATTTATTGCACAACGTGTGGTGTTCGTATTAAACgaaataatatgtattatacCATGGGTACTGGTGATACACGgcattatttttgtattccGTGCTACAATGAGCCTCGTGGAGATACCATTGTTGTTGATGGGACTCCCTTTCCGAAGTCAAggttagaaaagaagaaaaatgatgagGAAACGGAGGAATGGTGGGTTCAATGTGATAAATGTGAAGCATGGCAACATCAAATTTGTGCCTTATTTAATGGTCGAAGAAATGATGGTGGACAAGCTGAATACACTTGCCCTAATTGCTATATTCAAGAAGTAGAAAGAGGTGAGCGCAAGCCCTTACCCCAAAGTGCTGTTCTTGGAGCCAAGGATTTACCAAGAACAATTCTCAGTGACCACATAGAGCAACGATTATTTAGGCGACTAAAGCAAGAAAGACAAGAGAGGGCCCGGCTTCAAGGGAAAAGTTGTGATGAGGTGCCTGGAGCTGAAGCTCTTGTTATAAGAGTCGTGTCATCTGTTGACAAGAAGTTAGAAGTTAAACAGCGGTTTTTGGAGATATTTCAGGAAGAAAATTACCCAACAGAATTCCCATATAAATCGAAGGTAATTTTGTTGTTTCAGAAGATTCAAGGTGTGGAAGTATGCCTCTTTGGCATGTATGTTCAAGAGTTTGGATCTGAATGTCAATTTCCTAATCAACGTCGGGTTTATCTTTCATATCTGGACTCTGTAAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACTGGAGATGCTCTTCGGACATTTGTTTACCATGAAATTCTGaTTGGATACCTTGAGTATTGCAAGAAACGTGGTTTTACAAGCTGCTACATATGGGCATGTCCTCCATTAAAGGGtgaagattatattttatattgtcatccagaAATTCAGAAAACACCAAAATCTGATAAGCTTAGGGAATGGTACCTGTCCATGTTAAGAAAAGCTACCAAGGAGAATATTGTGGTTGATCTCATCAACTTGTACGACCATTTCTTTGTATCTTCTGGTGAATGTAGGGCTAGGGTTACAGCTGCAAGGCTCCCCTATTTTGATGGTGACTACTGGCCTGGGGCTGCAGAGGATTTGATTTATCAGTTTCAGCAAGAGGAAGatggaagaaaacaaaataagaaaggaaCAACTAAGAAGACTATAACAAAAAGGGCTTTAAAAGCATCTGGTCAGTCAGATCTTTCTGGAAACGCCTCAAAAGATCTTCTCCTGATGCACAAACTTGGTGAAACCATTTGCCCAATGAAGGAAGATTTTATCATGGTTCATTTGCAGCATGCTTGCACTCATTGTTGTATTCTAATGGTGTCTGGCAACCGTTGGGTTTGCAGCCAATGCAGGAATTTTCAGATTTGTGATAAGTGTTATGAAGCAGAACTAAAGCGTGAAGAGAGAGAACGGCATCCTATTAACCAGAGGGAGAAACACACCCTTTATCCTGTAGAAATTAGTGATGTACCTGCTGATACAAAGGACAAAGACGAGATTCTTGAGAGTGAATTTTTTGACACTAGGCAGGCATTTTTGAGTCTCTGCCAGGGAAATCATTATCAGTATGATACTCTAAGGAGGGCCAAGCATTCCTCTATGATGGTTCTCTATCATCTTCATAATCCAACTGCTCCTGCATTTGTTACAACATGTAGTATTTGCCGTCTTGACATAGAAACAGGTCAAGGTTGGCATTGTGAAGTTTGCCCTGAATATGATGTGTGCAATGCTTGTTATCAAAAAGAAGGTGGCACTGATCATCCTCATAAATTGACAAATCATCCGTCAATGGTAGATCGTGATGCTCAGAACAAGGAAGCAAGGCAACTTCGAGTATTACAGTTACGAAAAATGCTTGATCTTCTTGTGCATGCATCCCAATGTCGTTCCGCCCATTGCCAATATCCAAATTGTCGCAAGGTGAAGGGGCTTTTCCGTCATGGGATGCATTGCAAAACACGTGCCTCTGGAGGTTGTGTTCTATGCAAGAAAATGTGGTATTTGCTTCAACTCCATGCTCGTGCTTGCAAGGAATCTGAGTGCCATGTACCACGTTGCAGAGATTTAAAAGAACACTTAAGGAGGTTGCAGCAACAGTCTGATTCACGGCGAAGAGCTGCTGTCATGGAGATGATGAGGCAGAGAGCTGCAGAAGTTGCCAACAATTCTGGATGA 3351 0.4029 MSHEQHLPMDFHQRISGQDEAQCNNLSSDGSIIGQAVASRSSTELLDSSSTIKKAHRNQQRWLLFLLHARRCSAPEGRCQERHCSSAQKLCNHIDGCTIPNCPYPRCHHTRKLLHHFIKCKNPHCPVCVLVRNYRHAFQLKHRIRPDPESCLPNGSCESYNNVVGSSPRLISKSPLVVETSEVLPSLKRMKTEQCTQSINPEYDNSASSVLPNCESQDSKDTQCQANPCGDMSISAKSEFTEIKTEVLVHSIHENLSETKMDEDNAHDKRPTGKPATYNEPPNIARPDNIKPEKETGQDKQENVTQPPEHAAGTKSGKPKIKGVSMTELFTPEQVKEHIIGLRQWVGQSKSKAEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTMGTGDTRHYFCIPCYNEPRGDTIVVDGTPFPKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIQEVERGERKPLPQSAVLGAKDLPRTILSDHIEQRLFRRLKQERQERARLQGKSCDEVPGAEALVIRVVSSVDKKLEVKQRFLEIFQEENYPTEFPYKSKVILLFQKIQGVEVCLFGMYVQEFGSECQFPNQRRVYLSYLDSVKYFRPEVKAVTGDALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLSMLRKATKENIVVDLINLYDHFFVSSGECRARVTAARLPYFDGDYWPGAAEDLIYQFQQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNASKDLLLMHKLGETICPMKEDFIMVHLQHACTHCCILMVSGNRWVCSQCRNFQICDKCYEAELKREERERHPINQREKHTLYPVEISDVPADTKDKDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCSICRLDIETGQGWHCEVCPEYDVCNACYQKEGGTDHPHKLTNHPSMVDRDAQNKEARQLRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANNSG 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0007 1116 MobiDBLite consensus disorder prediction 256 274 - -
Ssu8g0007 1116 Coils Coil 516 536 - -
Ssu8g0007 1116 ProSiteProfiles Zinc finger ZZ-type profile. 818 881 IPR000433 GO:0008270
Ssu8g0007 1116 SUPERFAMILY RING/U-box 919 987 - -
Ssu8g0007 1116 Pfam PHD-finger 441 483 IPR019787 -
Ssu8g0007 1116 Gene3D TAZ domain 47 136 IPR035898 -
Ssu8g0007 1116 ProSitePatterns Zinc finger PHD-type signature. 411 482 IPR019786 -
Ssu8g0007 1116 ProSiteProfiles Zinc finger TAZ-type profile. 50 131 IPR000197 -
Ssu8g0007 1116 MobiDBLite consensus disorder prediction 199 228 - -
Ssu8g0007 1116 Gene3D TAZ domain 993 1112 IPR035898 -
Ssu8g0007 1116 SMART TAZ_2 1001 1079 IPR000197 -
Ssu8g0007 1116 SMART TAZ_2 53 131 IPR000197 -
Ssu8g0007 1116 CDD PHD_HAC_like 410 482 - -
Ssu8g0007 1116 ProSiteProfiles Zinc finger ZZ-type profile. 938 991 IPR000433 GO:0008270
Ssu8g0007 1116 Pfam Histone acetylation protein 540 756 IPR013178 GO:0004402|GO:0006355|GO:0016573
Ssu8g0007 1116 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 500 936 IPR031162 GO:0004402
Ssu8g0007 1116 ProSitePatterns Zinc finger ZZ-type signature. 943 970 IPR000433 GO:0008270
Ssu8g0007 1116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 483 IPR013083 -
Ssu8g0007 1116 Pfam Zinc finger, ZZ type 940 981 IPR000433 GO:0008270
Ssu8g0007 1116 SMART zz_5 937 983 IPR000433 GO:0008270
Ssu8g0007 1116 SMART zz_5 817 861 IPR000433 GO:0008270
Ssu8g0007 1116 SUPERFAMILY RING/U-box 798 873 - -
Ssu8g0007 1116 PANTHER CBP/P300-RELATED 32 1116 IPR013178 GO:0004402|GO:0006355|GO:0016573
Ssu8g0007 1116 SMART KAT11_2 533 830 IPR013178 GO:0004402|GO:0006355|GO:0016573
Ssu8g0007 1116 Pfam TAZ zinc finger 60 128 IPR000197 -
Ssu8g0007 1116 Pfam TAZ zinc finger 1008 1078 IPR000197 -
Ssu8g0007 1116 SUPERFAMILY TAZ domain 1000 1083 IPR035898 -
Ssu8g0007 1116 Gene3D - 937 991 IPR043145 -
Ssu8g0007 1116 PANTHER ZINC FINGER, TAZ-TYPE-RELATED 32 1116 - -
Ssu8g0007 1116 SUPERFAMILY TAZ domain 55 134 IPR035898 -
Ssu8g0007 1116 MobiDBLite consensus disorder prediction 256 322 - -
Ssu8g0007 1116 SUPERFAMILY FYVE/PHD zinc finger 444 484 IPR011011 -
Ssu8g0007 1116 Gene3D - 814 873 IPR043145 -
Ssu8g0007 1116 ProSiteProfiles Zinc finger TAZ-type profile. 998 1081 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0007 Ssu-Chr8 223472 239324 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Ssu8g0007 HAT_KAT11 9.3e-32 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0007 K04498 - gmx:100800511 2133.61