Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0003 atgaaactGCAGGCACATATTCCGGGGGAGATGTCAGGACAGGTACCTAATCAAGCAGGGTCTCAATTGTCTGGACTGACCCAACTGAATGGGAATGCACTCCCTCATCAGATGCCACCTTTAGGTGGTGTACCCCGTTCAACAATTAATATGGACCCTGATATTCTTAGAGCTCGCACCTTTATTCAAGAGAAGATCTTTGATATGTTGTTGCGACGACAACAGCAGCCACTTACAGATGTACAGAGAAGGAAGCTTAAGGATCTTGCAAAACGCTTGGAGGAGGGCATGTTAAAAGCTGCTCTCTCTAAGGAGGATTACATGAACTTGGATACACTAGAGAGTCGTTTATCAAATTTCCTTCGACGAGCATCTATGAATAATCACAACCAACAATATCCACAGCTTGTTAACCCTTCTCCAATTGGTACAATGATACCAACCCCTGGTTTGTCTAATGGTTATCAGCAATCTTCTACCAGCTTTTCTGTTGCCTCAGGGGggaacatttcatcaatggggGTCCAGAGAATTGCTAGCCAGATGATTCCCACTCCTGGATTCACAGTCAGCAGTAATCACTCACACATGAATATAGATTCTAATACAAGTGGCGGTGCCTTTTCCAGTGTAGAGTCTACTATGGTACCACAGTCACAGCTGCAGCAGCAGAAGCAGCATGTTGGTGGCCAAAATAGTCATGTATTGCAGAACCTCACCAGCCAGATGAGTAGCGGAATGAGATCTGGTTTACTACAGAAGCCATTTACAAACTCAAATGGTGCTATAAATAGTGGGTCAGGCTTGCTTGGAAACAATATACAACTTGCAAATGAACCTGGCCCTTCTGACAGCTATGCCTCAACTTATGCTAATTCCCCTAAACACTTGCAGCAGCACTTTGATCAAAATCAGAAACCAGTAGTGCAGGGTGATGGATATGGATTGAATAATGTCGACACTTTTGCTTCTGGAAACTTTTATACCTCTGCGACATCCTCTGGGTCTATGATGAACAATCAAAACACTAATTCAGTTACATTACCATCAGTACCCAAAACTAGCTCATTGATAAGTGGTCACTCGAATTTGCACGGTATGCAGCAGGCTGCTCATATAAAGTCTCAACCAAATAATCAGTTAGAAAAGTTGAATTTTCAGTCTTCATTGACTTCAAGAGATGGCCTTCTGCATTCTCAACAGCAATATCAGCAAAGGCCTCAACAATTGCAACAGCCAGATCAGTATGCACAGCAGCAATTTCAATCTATGCAAAGTCAACAGCCTCAGCATGTGGTCAACACTGATGCTTTCAGTCAGTCTCAGCTGTCTTCCAATCTAGAAAACCGAGTGAAGTCTGAACCTGGAATTGAACACCATAAAGAAGTGCTCAATTCTCATGTCTCTGAACAGTTCCACATGTCTGAGATGCAGAGTCAGTTCCAGCAGAACTCATCTGAAGATTGCTCTAGGAGTGCTCAACATCTTCCATTCCCATCTGGTCACCATGATTTATCCTCATCAACACCTCAAAATTTGCAACAAATGTTGCACCCACATCAATTGGTTGCAGAgtctcaaaataattttagctGTCTTACAGTTGGGGCACAATCCAAATCTGTAATTCTAAACCAATGGCCTCGATCACAAGATTGTAACCACACACCTGACAGTAATTCACAGGATCAGCATCTCTGCATGGATTTTCATCAAAGAATATCTGGACAAGATGAAGCTCAATGCAATAATTTATCATCAGATGGATCAATTATTGGTCGAGCTGTTCTTTCTAGAGGCTCAGCTGAGCAGCTGGACTCAGGAAGTGCTATAAAAAAGGCGCACAGGAATCAACAGAGGTGGCTTTTATTTCTACTTCATGCTCGACGGTGTTCTGCCCCCGAAGGACGATGCAAAGAAAGGTTTTGTTCTATTGCACAGAAGTTATGCAAGCACATAGATGGATGCACCCTGCGCCGTTGTCCATATCCTCGTTGCCATCATACCAGGGTGTTGCTTCATCATTTCATAAACTGCAAGGATCCATGTTGCCCTGTTTGTGTTTTTGTGAGAAAGTATCGACGTGCATTTCAACTCAAGCCTCAGATTCGGCCAGAACCTGAATCAAGCTTGCCAATTGCAGTGAATGGATCCTGTAAGCCTTACAATGTTGTCGGCACATCGCCGAGATTGATCTCAAAGCCTCCATTAATTGTTGAAACTTCGGAGGACTTGCACCCGTCCATAAAACGTATAAAGATTGAGCATTGCGCCCAGTCCATTGATCCTGAAAATGACCGTTCTGCTTCATCTTTTACTGCAAATTGTGAATCTCTTGTTTCCAGGGATGCTCAGTCCCAATCCCAAGCCTATCCCAATGCTGAGAAGTCTATCTCAATTAAATCTGAGCTTACAGAAGTTAAGGCTGAAGCTTCAGCGCATGTGGTACATGAAAAGCTTAGTGAGATGAAAATGGATAACAATAGTGCAGATGATAAAACTCCTAGTGCTGAACCTGTCAAATATGATGAACCTGCTAATTTAGCTAGGcctgataatataaaaactgaGAAAGAAACTGGACAAGACAGGCAAGAAAATGTTGTGCATACATTTGAAAATGCAGCTGGGACCAAGTCTGGTAAGCCAAAAATAAAGGGAGTCTCATTAACTGAATTATTTACTCCGGAGCAAGTCAGGGAACATATTACTGGCCTCAGGCAATGGGTTGGCCAGAGCAAGTCAAAAGCAGAGAAGAATCAAGCAATGGAGCATTCAATGAGTGAGAACTCCTGTCAATTATGTGCTGTTGAGAAGCTTACCTTTGAACCACCTCCTATTTATTGCACAACTTGTGGGGTTCGCATTAAACgaaataatatgtattatacCACGGGCACTGGTGACACACGgcattatttttgtattccGTGCTATAATGATGCTCGTACAGAGAACATCATTGTTGATGGGACTCCTATTGCCAAGACAAGattggaaaagaagaaaaatgatgagGAAACTGAGGAATGGTGGGTTCAATGTGATAAATGTGAAGCATGGCAACATCAAATTTGTGCCTTATTTAATGGTAGAAGAAATGATGGTGGACAAGCTGAATATACTTGCCCTAATTGCTATATTCAAGAGGTAGAAAGAGGAGAGCGCAAACCCTTACCCCAAAGTGCTGTTCTTGGAGCCAAGGATTTGCCGAGAACTATTCTTAGTGATCACATAGAACAGCGATTATTTAGACGGCTAAAGCAAGAAAGATTAGAAAGGGCAAGGATTCAAGGAAAAAGTTATGATGAGATACCTGGAGCTGAAGCTCTTGTTGTAAGAGTTGTGTCATCTGTTGACAAAAAGTTAGAAGTGAAACCGCGGTTTCTGGAGATTTTTCAGGAAGAGAATTACCCAACAGAATTTCCATATAAATCGAAGGTAATTTTGTTGTTTCAAAAGATAGAAGGTGTGGAAGTTTGcctatttggcatgtatgttcaAGAATTTGGATCCGAATGTCAATTTCCCAATCAGCGCCGCGTGTATCTTTCATATTTGGATTCTGTGAAGTATTTTAGGCCTGAGGTTAAAGCAGTGACGGGAGAGGCTCTTCGGACTTTTGTTTACCATGAAATTCTGATTGGATACCTTGAATATTGCAAGAAACGTGGTTTTACAAGCTGCTATATATGGGCTTGTCCTCCATTAAAGGGtgaagattatattttatattgccATCCAGAAATTCAGAAAACACCGAAATCTGATAAGCTACGTGAATGgTATCTATCCATGTTAAGAAAAGCTGCCAAGGAGAATATTGTGGTCGATCTCACCAACTTATATGATCATTTCTTCGTATCTACTGGTGAATGTAGGGCTAAGGTTACTGCTGCAAGACTACCATATTTTGATGGTGACTACTGGCCTGGGGCTGCAGAGGATTTGATTTATCAGCTTCGCCAAGAGGAAGACggaaggaaacaaaataaaaagggaacaaCTAAAAAGACTATAACAAAAAGGGCTTTAAAAGCGTCTGGTCAGTCAGATCTTTCAGGAAATGCCTCGAAGGACCTGCTCCTTATGCACAAACTTGGTGAAACCATTTGCCCGATGAAGGAAGACTTTATTATGGTTCATTTGCAGCATGCATGTACTAGCTGTTGTATTTTAATGGTGTCTGGAAACCGCTGGGTTTGCAATCAGTGCAAGAATTTTCAGATTTGTGATAAGTGTTATGAAGCAGAACTAAAgcgtgaagagagagaaagacatCCTATTAATCAGAGGGAGAAACATACTCTTTATCCGGTTGAAATTACTGATGTTCCATCTGATACAAAGGACAAAGATGATATTCTTGAGAGTGAATTCTTTGACACCAGACAGGCATTTCTCAGTCTCTGCCAGGGAAATCATTACCAGTATGATACACTAAGGCGGGCCAAGCATTCCTCAATGATGGTCCTCTATCATCTTCATAATCCAACAGCTCCTGCATTTGTGACAACTTGCAATATATGTTATCTTGACATAGAAACTGGTCAAGGATGGCGCTGTGAAGTTTGCCCTGAGTATGATGTATGCAATGCTTGTTATCAAAAGGAAGGAGGTATTGATCATCCTCATAAGTTGACAAATCATCCGTCCATGGTGGATCGTGATGCTCAGAACAAAGAAGCAAGGCAGCTTCGAGTATTGCAGCTACGGAAAATGCTTGATCTCCTTGTTCATGCATCCCAATGTCGTTCTGCACATTGCCAATATCCCAATTGTCGCAAGGTGAAGGGGCTTTTCCGCCATGGGATGCACTGCAAAACCCGAGCTTCTGGAGGTTGTGTTCTTTGCAAGAAAATGTGGTATTTGCTTCAACTTCATGCTCGTGCTTGCAAAGAATCTGAATGCCACGTACCACGTTGCAGAGATTTAAAAGAACATTTAAGGAGGTTGCAGCAACAGTCTGATTCACGGCGTAGAGCTGCTGTAATGGAAATGATGAGGCAGAGAGCTGCAGAAGTTGCAAACAATGCTGGATGA 5043 0.4061 MKLQAHIPGEMSGQVPNQAGSQLSGLTQLNGNALPHQMPPLGGVPRSTINMDPDILRARTFIQEKIFDMLLRRQQQPLTDVQRRKLKDLAKRLEEGMLKAALSKEDYMNLDTLESRLSNFLRRASMNNHNQQYPQLVNPSPIGTMIPTPGLSNGYQQSSTSFSVASGGNISSMGVQRIASQMIPTPGFTVSSNHSHMNIDSNTSGGAFSSVESTMVPQSQLQQQKQHVGGQNSHVLQNLTSQMSSGMRSGLLQKPFTNSNGAINSGSGLLGNNIQLANEPGPSDSYASTYANSPKHLQQHFDQNQKPVVQGDGYGLNNVDTFASGNFYTSATSSGSMMNNQNTNSVTLPSVPKTSSLISGHSNLHGMQQAAHIKSQPNNQLEKLNFQSSLTSRDGLLHSQQQYQQRPQQLQQPDQYAQQQFQSMQSQQPQHVVNTDAFSQSQLSSNLENRVKSEPGIEHHKEVLNSHVSEQFHMSEMQSQFQQNSSEDCSRSAQHLPFPSGHHDLSSSTPQNLQQMLHPHQLVAESQNNFSCLTVGAQSKSVILNQWPRSQDCNHTPDSNSQDQHLCMDFHQRISGQDEAQCNNLSSDGSIIGRAVLSRGSAEQLDSGSAIKKAHRNQQRWLLFLLHARRCSAPEGRCKERFCSIAQKLCKHIDGCTLRRCPYPRCHHTRVLLHHFINCKDPCCPVCVFVRKYRRAFQLKPQIRPEPESSLPIAVNGSCKPYNVVGTSPRLISKPPLIVETSEDLHPSIKRIKIEHCAQSIDPENDRSASSFTANCESLVSRDAQSQSQAYPNAEKSISIKSELTEVKAEASAHVVHEKLSEMKMDNNSADDKTPSAEPVKYDEPANLARPDNIKTEKETGQDRQENVVHTFENAAGTKSGKPKIKGVSLTELFTPEQVREHITGLRQWVGQSKSKAEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTTGTGDTRHYFCIPCYNDARTENIIVDGTPIAKTRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIQEVERGERKPLPQSAVLGAKDLPRTILSDHIEQRLFRRLKQERLERARIQGKSYDEIPGAEALVVRVVSSVDKKLEVKPRFLEIFQEENYPTEFPYKSKVILLFQKIEGVEVCLFGMYVQEFGSECQFPNQRRVYLSYLDSVKYFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLSMLRKAAKENIVVDLTNLYDHFFVSTGECRAKVTAARLPYFDGDYWPGAAEDLIYQLRQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNASKDLLLMHKLGETICPMKEDFIMVHLQHACTSCCILMVSGNRWVCNQCKNFQICDKCYEAELKREERERHPINQREKHTLYPVEITDVPSDTKDKDDILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICYLDIETGQGWRCEVCPEYDVCNACYQKEGGIDHPHKLTNHPSMVDRDAQNKEARQLRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANNAG 1680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0003 1680 PANTHER HISTONE ACETYLTRANSFERASE HAC12 137 383 - -
Ssu8g0003 1680 PANTHER HISTONE ACETYLTRANSFERASE HAC12 388 1678 - -
Ssu8g0003 1680 SMART zz_5 1501 1547 IPR000433 GO:0008270
Ssu8g0003 1680 SMART zz_5 1381 1425 IPR000433 GO:0008270
Ssu8g0003 1680 ProSitePatterns Zinc finger PHD-type signature. 975 1046 IPR019786 -
Ssu8g0003 1680 ProSitePatterns Zinc finger ZZ-type signature. 1507 1534 IPR000433 GO:0008270
Ssu8g0003 1680 Gene3D - 1378 1437 IPR043145 -
Ssu8g0003 1680 Pfam Histone acetylation protein 1104 1324 IPR013178 GO:0004402|GO:0006355|GO:0016573
Ssu8g0003 1680 MobiDBLite consensus disorder prediction 824 865 - -
Ssu8g0003 1680 ProSiteProfiles Zinc finger TAZ-type profile. 1562 1645 IPR000197 -
Ssu8g0003 1680 PANTHER CBP/P300-RELATED 137 383 IPR013178 GO:0004402|GO:0006355|GO:0016573
Ssu8g0003 1680 PANTHER CBP/P300-RELATED 388 1678 IPR013178 GO:0004402|GO:0006355|GO:0016573
Ssu8g0003 1680 SUPERFAMILY RING/U-box 1362 1436 - -
Ssu8g0003 1680 MobiDBLite consensus disorder prediction 824 839 - -
Ssu8g0003 1680 ProSiteProfiles Zinc finger ZZ-type profile. 1382 1445 IPR000433 GO:0008270
Ssu8g0003 1680 Gene3D - 1501 1555 IPR043145 -
Ssu8g0003 1680 CDD PHD_HAC_like 974 1046 - -
Ssu8g0003 1680 Gene3D TAZ domain 1559 1676 IPR035898 -
Ssu8g0003 1680 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1064 1500 IPR031162 GO:0004402
Ssu8g0003 1680 MobiDBLite consensus disorder prediction 193 231 - -
Ssu8g0003 1680 SUPERFAMILY FYVE/PHD zinc finger 1008 1048 IPR011011 -
Ssu8g0003 1680 SUPERFAMILY RING/U-box 1483 1551 - -
Ssu8g0003 1680 SMART KAT11_2 1097 1394 IPR013178 GO:0004402|GO:0006355|GO:0016573
Ssu8g0003 1680 Pfam Zinc finger, ZZ type 1504 1543 IPR000433 GO:0008270
Ssu8g0003 1680 Gene3D TAZ domain 606 695 IPR035898 -
Ssu8g0003 1680 Pfam TAZ zinc finger 1572 1642 IPR000197 -
Ssu8g0003 1680 Pfam TAZ zinc finger 619 687 IPR000197 -
Ssu8g0003 1680 SUPERFAMILY TAZ domain 1564 1647 IPR035898 -
Ssu8g0003 1680 SUPERFAMILY TAZ domain 615 694 IPR035898 -
Ssu8g0003 1680 SMART TAZ_2 612 690 IPR000197 -
Ssu8g0003 1680 SMART TAZ_2 1565 1643 IPR000197 -
Ssu8g0003 1680 ProSiteProfiles Zinc finger ZZ-type profile. 1502 1555 IPR000433 GO:0008270
Ssu8g0003 1680 MobiDBLite consensus disorder prediction 848 865 - -
Ssu8g0003 1680 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 999 1047 IPR013083 -
Ssu8g0003 1680 MobiDBLite consensus disorder prediction 334 374 - -
Ssu8g0003 1680 ProSiteProfiles Zinc finger TAZ-type profile. 609 690 IPR000197 -
Ssu8g0003 1680 Pfam PHD-finger 1005 1047 IPR019787 -
Ssu8g0003 1680 MobiDBLite consensus disorder prediction 399 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0003 Ssu-Chr8 69843 82787 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Ssu8g0003 HAT_KAT11 2.2e-32 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0003 K04498 - gmx:100809207 3089.29