Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0001 ATGAAGTTAGAAGTGGAGGTAATCTCCAAAGAAATCATCAAACCCTCTTCTCCAACCCAGGACCATCTTCGTCACTACCAACTCTCTTTTCTCGATCAAGTCTCTCCCATGGTGTATAACCCTAtggttcttttttattcttgcgACGGTACCACTCAATTCAACATAACCACCATTTCCAAAAGGCTGAAGAAATCTTTATCTGATGTTTTAACCCATTTCTACCCGCTTGCCGGACGAATCAATGGCAACAGTTTCATAGACTGCAACGACGAAGGCATTCCCTACTTAGAAGCAAAAGTGAAGTGCAAAGTTGTCGACGTTATTCATAGGCCAGATCCGGGAGAACTCAACCATTTGGTTCCATTTCTACTAGATGATATCACCAATATCACATTTGGTGTTCAACTTAATGTCTTTGATTGCGGTGGTATTGCAATCGGAGCTTGCCTTTCTCACCAGATTGCAGACGGTCTCTCATTTTTCACGTTCCTCAATTGTTGGGCAGCCATTGCTAGGGAACAAGCTGTGTCGCCAAATCCACAGTTTATTTCATCTGAGCTCTTCCCACCGAAAAATATATCTGGGTTTGATCCTCGAATTGGCATCATGAAGGAGAACATTATCTGCAAGATGTTTGAGTTTGACGGTTCtgttgttgaaaattttagagCAAAATATGCAGATACCCAAAGCTTTGAAAATGAGAAGCGCCCTACCCGAGTGGAGGCCTTATCTGCTTTCATTTGGAGTCGTTATGTGGCTGTGACTAGAGAGCAATCTGGTCCACAGAGAACATATGCTGTGATTCATGCAGTGAACCTGCGTCCAAAGATGGAACCACCACTGCCTTCAGATTCCTTTGGTAATTACTACCGAATCACCATGACAATTCCATCGTTGAACACTAGAGAACATGGTCTAGTGAAACAGGTAAGGGATGAGATAAAGAAGATTGACAAGGATTATGTGAGAAAACTCCAAGATGGAAACGAGCATTTGGATTTCCTTAAGGATAGTTCGTATAGAGTGCTTATGAAGGGGGAActggtctcatttaatattACTAGTTTGTGTAGGTTTCCTCTGTATGAAGCTGATTTTGGATGGGGAAAACCAACATGGGTAGGTTCACCcgctttaacttttaaaaatctgGTTGTGTTTATAGACACAAAGAATGGTGATGGCATAGAGGCTTATGTTAGCTTAAAGGTGGAGGACATGACGAAGTTCGAAGCAGATGAGGAGTTGCTTGCCTATGTGAATAAAGCACGGGTTTGTtga 1287 0.4017 MKLEVEVISKEIIKPSSPTQDHLRHYQLSFLDQVSPMVYNPMVLFYSCDGTTQFNITTISKRLKKSLSDVLTHFYPLAGRINGNSFIDCNDEGIPYLEAKVKCKVVDVIHRPDPGELNHLVPFLLDDITNITFGVQLNVFDCGGIAIGACLSHQIADGLSFFTFLNCWAAIAREQAVSPNPQFISSELFPPKNISGFDPRIGIMKENIICKMFEFDGSVVENFRAKYADTQSFENEKRPTRVEALSAFIWSRYVAVTREQSGPQRTYAVIHAVNLRPKMEPPLPSDSFGNYYRITMTIPSLNTREHGLVKQVRDEIKKIDKDYVRKLQDGNEHLDFLKDSSYRVLMKGELVSFNITSLCRFPLYEADFGWGKPTWVGSPALTFKNLVVFIDTKNGDGIEAYVSLKVEDMTKFEADEELLAYVNKARVC 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0001 428 Gene3D - 1 196 IPR023213 -
Ssu8g0001 428 Pfam Transferase family 4 418 - -
Ssu8g0001 428 Gene3D - 205 422 IPR023213 -
Ssu8g0001 428 PANTHER ANTHRANILATE N-BENZOYLTRANSFERASE 2 424 - -
Ssu8g0001 428 PANTHER F21J9.9 2 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0001 Ssu-Chr8 2907 4193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0001 3 413 Monolignol Biosynthesis Gene Families AT5G48930 26.457 7.35e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0001 K13065 - gmx:102670206 745.732