Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3302 ATGGAAACAGCGCTCACTTGCTTCTTCTGTGGTAGGGTCCCGGCGAAGGCGAAATTGGGGACCGCAACTGCAAGTGAGCGCTTCCGTTGTAACGCCTCTGGCTCTGGACAAGTGCGCTTTTCTTCCTCGTTTGGGTCATTGTGCCGTAATAATGCCTACACCATGTCCATGTGCTCTTTGTCCCCTTCATTTGGCACCCATCGGCTTCTCATTCGAAACGCAGCTAACAGCGCCAGCGAAACTAAGGTTCCCACTGATGCCAAAAGCAGAAGAAGGAGACAAAGAAGAAGTGGCTTTGATAAAAatggtagtggtagtggtagtATCCATCAGAATGGGGACCCTATTGGGAAGAAGGATCTTGGGAAGAGCGCGATGAGGTGGATTCGCGATAGCATGAGGGCGATGGCGTCTGATTTAGCCGCAGCGGAGTTACAGGGAGAGTTGGACCTGTGGGAGCGCATGGGACCGGGCCTCACTTTTATTATGCAGGCCCAGCCATATCTGAATGCGGTTCCTATGCCCCTTGGCCTTGAAGTTATATGCTTGAAGGCCTGCACACACTATCCCACCCTCTTCGACCATTTCCAGAGGGAGCTTCGCGAAGTTCTCCGAGACTTGCAGAGTAAGTCCTTGGTTCAGGACTGGCGGGCCACCGAGTCCTGGAAACTTCTCAAGGACCTCGCCAATTCAgCTCAGCATAGGGCGGTTGTGAGGAAGGTACCACGGGCCAAGAGTGTCCAAGGCGTTTTAGGAATGGATTTAGAGAAGGTCAAAGCGATACAGCACAGGATTGATGAATTCACCAACCACATGTCAGAGCTGCTCCGTATTGAAAGGGATGCCGAATTGGAGTTTACTCAGGAGGAATTGGATGCTGTTCCTAAACCAGATGATACTTCTGATTCTTCAAAACCGATTGATTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTCTGCGACACCATTTGTAATTTAAATGCCATCAGTACCTCTACAGGACTGGGGGGAATGCATTTGGTGTTATTCAAGGTTGAAGGAAACCACCGGTTACCACCTACCACTCTTTCACCCGGAGACATGGTTTGTGTGAGAACGTGTGACAGCAAGGGTGCAATTACAACTTCTTGCATACAAGGATTTGTAAACAGTTTCGAGGATGATGGCTGTAGTATTACAGTTGCTTTAGAGTCACGCCATGGTGATCCTACATTCTCTAAACTATTTGGGAAGAGTGTGCGCATTGACCGTATTCAAGGATTGGCTGATACACTTACCTATGAGCGCAACTGTGAAGCTTTAATGCTGCTTCAGAAGAATGGTTTACGAAAGAAGAATCCTGCAATTTCTGTTGTTGCTACACTGTTTGGAGATGGGGAAGATGTTGCATGGCTTGAGAAGAATAATTTGGCTGACTGGGAAGAAGAAAACTTGGATGGAATATTAGGAAGTGAAACCTTTGATGATTCTCAGCGGAGAGCAATTGCACTGggtttgaataaaaagaggCCTGTATTGGTTATCCAAGGGCCTCCTGGTACAGGCAAGACTGGTTTGCTCAAGCAACTCATAGAATGTGCTGTTCAGCAAGGTGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTTGATAACATGGTTGAAAAGCTTTCAAATGTCGGATTAAATATTGTGCGGGTTGGAAATCCAATTCGTATATCAAAAACAGTGGGATCAAAGTCTTTGGGAGAAATTGTGAATGCTAAGCTTGCAAGTTTTCGCGAAGAGTATGAGAGGAAGAAGTCAGATCTAAGGAAAGATCTAAGACATTGTTTAAGAGATGATTCACTAGCAGCAGGCATACGGCAACTTCTGAAACAGCTGGGAAGGTCgctgaagaaaaaggaaaagcagACCATGAATGAGGTTCTATCTAGTGCTCAGGTTGTGCTTGCCACTAATACTGGAGCAGCTGACCCTTTGATTCGAAGGCTAGATACTTTTGACTTGGTTGTCATAGATGAAGCCGGACAGGCAATTGAACCCTCTTGCTGGATTCCTATATTGCAGGGAAAGCGCTGTATTCTTGCTGGTGATCAATGTCAACTTGCTCCTGTCATATTATCTAGAAAGGCCTTAGAAGGTGGTCTAGGAATATCTCTACTGGAGAGAGCTGCAACTTTGCATGAAGGGATTCTCACCACCAGGTTAACAACACAATACCGTATGCATGATGCAATTGCTAGTTGGGCTTCAAAGGAGATGTACGGAGGACTGCTGAAGTCCTCTCAGACTGTCTTTTCCCATCTTCTTGTAGACTCTCCTTTTGTTAAGCCTACTTGGATAACACAATGCCCACTGCTATTGCTAGATACTAGAATGCCATATGGAAGTCTGTCAGTTGGTTGCGAAGAGCATCTAGACCCAGCGGGAACAGGCTCATTTTATAATGAAGGAGAAGCTGAGATAGTTTTGCAGCATGTCTTTTCCTTAATTTATGCTGGTGTTAACCCAACTGCTATTGCAGTGCAATCCCCTTACGTTGCTCAAGTACAACTTTTGAGGGACAAGCTTGATGAATTTCCAGAAGCTGCAGGTACTGAGGTTGCGACCATTGACAGTTTTCAAGGTCGAGAAGCTGATGCAGTAATTTTATCCATGgtaCGATCAAACACACTGGGAGCTGTTGGATTCCTCGGGGATAGCAGAAGAATCAATGTTGCCATCACAAGAGCACGCAAACATTTAGCTTTGGTCTGTGACAGCTCGACTATATGCCACAATACCTTCTTAGCAAGACTTCTGCGTCATATTAGACACTTTGGTAGGGTGAAGCATGCAGAACCAGGTAGTTTTGGAGGTTACGGACTTGGGATGAATCCAATATTACCTTCCATTAATTAG 2889 0.4503 METALTCFFCGRVPAKAKLGTATASERFRCNASGSGQVRFSSSFGSLCRNNAYTMSMCSLSPSFGTHRLLIRNAANSASETKVPTDAKSRRRRQRRSGFDKNGSGSGSIHQNGDPIGKKDLGKSAMRWIRDSMRAMASDLAAAELQGELDLWERMGPGLTFIMQAQPYLNAVPMPLGLEVICLKACTHYPTLFDHFQRELREVLRDLQSKSLVQDWRATESWKLLKDLANSAQHRAVVRKVPRAKSVQGVLGMDLEKVKAIQHRIDEFTNHMSELLRIERDAELEFTQEELDAVPKPDDTSDSSKPIDFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVLFKVEGNHRLPPTTLSPGDMVCVRTCDSKGAITTSCIQGFVNSFEDDGCSITVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPAISVVATLFGDGEDVAWLEKNNLADWEEENLDGILGSETFDDSQRRAIALGLNKKRPVLVIQGPPGTGKTGLLKQLIECAVQQGERVLVTAPTNAAVDNMVEKLSNVGLNIVRVGNPIRISKTVGSKSLGEIVNAKLASFREEYERKKSDLRKDLRHCLRDDSLAAGIRQLLKQLGRSLKKKEKQTMNEVLSSAQVVLATNTGAADPLIRRLDTFDLVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGISLLERAATLHEGILTTRLTTQYRMHDAIASWASKEMYGGLLKSSQTVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSFYNEGEAEIVLQHVFSLIYAGVNPTAIAVQSPYVAQVQLLRDKLDEFPEAAGTEVATIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLALVCDSSTICHNTFLARLLRHIRHFGRVKHAEPGSFGGYGLGMNPILPSIN 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3302 962 Pfam AAA domain 488 704 IPR041677 GO:0004386
Ssu7g3302 962 MobiDBLite consensus disorder prediction 75 120 - -
Ssu7g3302 962 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 78 962 - -
Ssu7g3302 962 CDD DEXXQc_SMUBP2 488 737 - -
Ssu7g3302 962 Pfam AAA domain 714 917 IPR041679 -
Ssu7g3302 962 Coils Coil 589 609 - -
Ssu7g3302 962 CDD SF1_C_Upf1 738 934 IPR041679 -
Ssu7g3302 962 Gene3D - 291 422 - -
Ssu7g3302 962 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 78 962 - -
Ssu7g3302 962 SMART AAA_5 503 718 IPR003593 -
Ssu7g3302 962 SMART ultradead3 484 736 IPR014001 -
Ssu7g3302 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 924 IPR027417 -
Ssu7g3302 962 Gene3D - 272 720 IPR027417 -
Ssu7g3302 962 Gene3D - 736 944 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3302 Ssu-Chr7 79184161 79196530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3302 482 677 Core DNA Replication Machinery Family AT1G08840 27.000 3.50e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3302 - - gmx:100799347 1647.87