Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3298 ATGGATCATTTTTTTCCTGAGAAACTTCTCGGTGAGATTTTCTGGGATGAATCTCTTTTAGCCACTGATCAAAGTGATTCAGTTCAAGATTCCCAAACCATTAAGGGTGAAGCTTTTCCTCCTGCAGCTCGAAGCGCTTTCGTTCAATATAGAGACCTGCCCACCAGAGTTAATTCTCTAAACGGGTCTAACTCCCAGACCATGAGTAAGAGAATGCTTGCGTTCTTGAGAAAAAGTTGGCCTGTAGAGAGAAATAACGCGGAAGAGAATGAAAGAGATCATAGTTTCAGGCACATGATTAACGAAAGAATGAGGAGGCAGAGGCAGAGGCACTGTTGCTTGGCCCTGCATTCAGTGTTACCACATGGAACCAAAACGGACAATAATTCTGTAATTCAAATGGCAGCCAAGGAGATTCTACGGCTACAAGGATTCAGAGAAGAGTTGCAGAGGAAAAATTTTGAGCTTCAAGCAAATCTTGAAGCTGTTGAGAGCAACCAAGGTGGGGGaagtaaaattcaatatttaagaGTTCCACATCCTGAGTCTGGAATTGATTCTATGGTTGAGACCCTCAAACGCTTGAAAGACCAAGGAGTGGATACCAGAAGCATCAAATCAACTTTCTCCCCACAGGAGTTGTTTGCAGCGTTAGAGATCGAAACTAAGGTTGTAGATGCTGATGTGGAAAGCGATACTCGGAGAACACTTGATGAACTTGAGGGGAAGGTTCATTCTCACGCCCGGGAAAGTTCTAAAAAGCAAAGGATTGATTAG 777 0.4273 MDHFFPEKLLGEIFWDESLLATDQSDSVQDSQTIKGEAFPPAARSAFVQYRDLPTRVNSLNGSNSQTMSKRMLAFLRKSWPVERNNAEENERDHSFRHMINERMRRQRQRHCCLALHSVLPHGTKTDNNSVIQMAAKEILRLQGFREELQRKNFELQANLEAVESNQGGGSKIQYLRVPHPESGIDSMVETLKRLKDQGVDTRSIKSTFSPQELFAALEIETKVVDADVESDTRRTLDELEGKVHSHARESSKKQRID 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3298 258 CDD bHLH_AtbHLH_like 98 150 IPR045239 -
Ssu7g3298 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 93 142 IPR011598 GO:0046983
Ssu7g3298 258 PANTHER TRANSCRIPTION FACTOR BHLH92 1 248 - -
Ssu7g3298 258 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 248 IPR044658 -
Ssu7g3298 258 Coils Coil 146 166 - -
Ssu7g3298 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 158 IPR036638 GO:0046983
Ssu7g3298 258 MobiDBLite consensus disorder prediction 238 258 - -
Ssu7g3298 258 Gene3D - 96 167 IPR036638 GO:0046983
Ssu7g3298 258 Pfam Helix-loop-helix DNA-binding domain 97 143 IPR011598 GO:0046983
Ssu7g3298 258 SMART finulus 99 148 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3298 1 224 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43650 36.638 1.83e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3298 - - gmx:100815874 391.734