Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3291 ATGGAAAGCAGAGCGGCATATGAGAATGATCTGAACCTAAAGGCAACAGAGCTAAGATTGGGGTTGCCAGGGACCGAGGAAAAGGATGAGAAAACCACCGTGCATGGTGTTAGAAACCACAAAAGGCAAGTGCGAGAAAATTCTGAAGAGTCTGTTTCCATTTCCAAGGCCTCACATGACCAACATGTGGAGAGTGATGCAGCCCCTCCTACCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTACAGGAAAAACAGTCTACAGGAGGGTGAGGGGGATGggatctatgtgaaagtgagcATGGATGGAGCACCTTACCTCagaaagattgacttgaaagtCTATAGAGGCTATCCAGAACTACTCAAAGCTTTAGAGACCATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAGAGAGGGTTATAAGGGGTCTGAATATGCACCTACATATGAAGACAAGGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGAGTAA 510 0.4353 MESRAAYENDLNLKATELRLGLPGTEEKDEKTTVHGVRNHKRQVRENSEESVSISKASHDQHVESDAAPPTKAKIVGWPPIRSYRKNSLQEGEGDGIYVKVSMDGAPYLRKIDLKVYRGYPELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWE 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3291 169 ProSiteProfiles PB1 domain profile. 96 169 IPR000270 GO:0005515
Ssu7g3291 169 PANTHER AUXIN-INDUCED PROTEIN 10 169 - -
Ssu7g3291 169 SUPERFAMILY CAD & PB1 domains 86 169 - -
Ssu7g3291 169 MobiDBLite consensus disorder prediction 22 67 - -
Ssu7g3291 169 Gene3D - 91 169 - -
Ssu7g3291 169 MobiDBLite consensus disorder prediction 22 74 - -
Ssu7g3291 169 Pfam AUX/IAA family 16 169 IPR033389 -
Ssu7g3291 169 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 169 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3291 Ssu-Chr7 78774361 78775435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3291 99 168 B3 DNA Binding Superfamily AT2G46530 42.857 9.48e-10 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu7g3291 AUX_IAA 2e-37 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3291 K14484 - gmx:100800212 292.737