Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3290 ATGATCTCCTACGTCGTCCAACCCTCCGACAACGTGTCCTCCCTCGCTTCGAGGTTCGGGGCGGATGAGCAGTCCATAATCGATGTCAACGGGGACGCTCTGCACGACTATGACACGATCTTCATCCCGGTGACTCGGTTGCCGGCTCTGTCGCAGCCCGCGGCGGTTCCTTCCGCGCCGCCGCCGGGGAATGGGACTACGGTGATTCGAAGCGGAAATGATAGGACGGGGACTGTTAGAGGGTTGGGTGTGGGGTTGGGGGTCGTGGGGTTGTTGTTGGTTCTGGTGAGCGGGGGTTGGGTGTACAGGGAGGTGGCGATGAAGGAGAGGTTGGGGGTGGTGAGGGGTgacgaggaggaggaggaggaggggaGACAGGGGAAAGTGTATCTGGGAGGGAATAAAGAGGACAAATTAAAGGTGAAGTTGATGGCGGCCAATGTGTCGGATTGTTTGGACAAGTATAGGGTTTTTGGGATTGAGGAACTGGTGGATGCCACGGATGGGTTTGACGAGAATTGCTTGATTCAGGGGTCGGTGTACAAAGGCCAAATTGACGGAGAGGTCTTTGCCATCAAGAAGATGAAGTGGAATGCATATGAGGAGCTCAAGATCTTGCAGAAGGTAAACCATGGGAATCTGGTGAAGTTGGAGGGATTTTGCATAGACCCAGAAGAAGAAAATTGCTATCTAGTCTATGAATATGTGGAGAATGGATCTCTACACTCATGGCTGCATGAGGACAAAAACGAAAGGCTGAACTGGAAAACAAGGCTACGAATAGCCATTGACATTGCCAATGGCCTCCAGTACATCCACGAGCACACGAGGCCACGAGTTGTGCACAAAGACATCAAGAGCAGCAACATTCTCTTGGATTCCAACATGAGAGCCAAAATTGCCAACTTTGGGCTTGCGAAGTCGGGAATGAATGCCATTACCATGCACATTGTGGGAACACAGGGCTATATTGCCCCTGAATATCTGGCTGATGGTGTGGTCTCTACAAAGATGGACGTGTTCTCTTTTGGGGTGGTGTTGCTTGAACTGATTTCTGGGAAGGAGGCCATTGATGAGGAGGGAAGTCTCTTGTGGGCAAGTGCCATAAAAACTTTTGAAGTGAACAATGAGCAAGAGAAGGCCAGGAGGCTGAAGGAATGGTTGGATAAGGATATTTTGAGGGAGACATGCTCAATGGAAAGTTTGATGGGCGTTCTCACTGTTGCAATTGCTTGTTTGCATAGAGACCCGTCAAAGAGGCCCAGCATAATGGATATTGTCTATGCACTAAGTAAAAGTGAAGATATGGGCTTTGAGATCTCAGATGAAGGGATCGATTCCCCACGGGTGATGGCTAGGTGA 1362 0.4927 MISYVVQPSDNVSSLASRFGADEQSIIDVNGDALHDYDTIFIPVTRLPALSQPAAVPSAPPPGNGTTVIRSGNDRTGTVRGLGVGLGVVGLLLVLVSGGWVYREVAMKERLGVVRGDEEEEEEGRQGKVYLGGNKEDKLKVKLMAANVSDCLDKYRVFGIEELVDATDGFDENCLIQGSVYKGQIDGEVFAIKKMKWNAYEELKILQKVNHGNLVKLEGFCIDPEEENCYLVYEYVENGSLHSWLHEDKNERLNWKTRLRIAIDIANGLQYIHEHTRPRVVHKDIKSSNILLDSNMRAKIANFGLAKSGMNAITMHIVGTQGYIAPEYLADGVVSTKMDVFSFGVVLLELISGKEAIDEEGSLLWASAIKTFEVNNEQEKARRLKEWLDKDILRETCSMESLMGVLTVAIACLHRDPSKRPSIMDIVYALSKSEDMGFEISDEGIDSPRVMAR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3290 453 ProSiteProfiles Protein kinase domain profile. 115 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g3290 453 PANTHER - 1 450 - -
Ssu7g3290 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Ssu7g3290 453 Pfam Protein kinase domain 178 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g3290 453 SMART serkin_6 170 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g3290 453 Gene3D Transferase(Phosphotransferase) domain 1 236 443 - -
Ssu7g3290 453 MobiDBLite consensus disorder prediction 53 72 - -
Ssu7g3290 453 SUPERFAMILY Protein kinase-like (PK-like) 155 430 IPR011009 -
Ssu7g3290 453 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 1 450 - -
Ssu7g3290 453 Gene3D Phosphorylase Kinase; domain 1 141 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3290 Ssu-Chr7 78738182 78742130 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3290 145 447 Receptor kinase-like Gene Family AT2G33580 38.245 3.87e-62 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Ssu7g3290 Pkinase 2.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3290 - - gmx:100802872 674.085