Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3278 ATGAGCCTTGGGAGGAGTTCTCAACAAatatgttCTTGGGAATTTTGTGCTCGGCGCCATGAGGAGCTCATCCCCAAGAGATTGTTAATACCGCAGGTTGCCGacaaACATACTTGGCTGAttgaatatttgattaataaaccAATTTATTCTCTGTTGATTGTTAGTCTTGATAATCTTTTTCCCGTCACTGTGGGTCTGCAGATCTATGGGTTCCTGgTTAGTCAGCTTGGAGCGGTTGCACAAAAATACCACGCTTTTACTCAAAATGCAACAGCCAATGTATCTGTTCCgaaattacaaaatatcaaCGAGTTGGACTAA 324 0.3796 MSLGRSSQQICSWEFCARRHEELIPKRLLIPQVADKHTWLIEYLINKPIYSLLIVSLDNLFPVTVGLQIYGFLVSQLGAVAQKYHAFTQNATANVSVPKLQNINELD 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3278 107 Pfam LIM-domain binding protein 6 40 IPR029005 -
Ssu7g3278 107 PANTHER LIM DOMAIN-BINDING PROTEIN 74 103 IPR029005 -
Ssu7g3278 107 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 74 103 - -
Ssu7g3278 107 PANTHER LIM-DOMAIN BINDING PROTEIN/SEUSS-RELATED 9 35 - -
Ssu7g3278 107 PANTHER LIM DOMAIN-BINDING PROTEIN 9 35 IPR029005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3278 Ssu-Chr7 78583328 78584319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3278 9 34 C2H2 Transcription Factor Family AT1G43850 84.615 2.22e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3278 - - gmx:100799771 81.2629