Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3277 ATGGAACAACCACCGTCGTCGCCGCCGCCACGCACGATCCTGGGGAAGTACCAGCTCACGCGCTTCCTCGGGCGCGGAAATTTCGCGAAGGTGTACCAGGCGCGGTCGCTGGTCGACGGCGGCACGGTGGCGGTGAAGGCGATCGACAAGTCGAAGACGGTGGACGCCGCCATGGAGCCGCGCATCGTGCGCGAGATCGACGCCATGCGGCGGCTCCACCACCACCCGAACATCCTCAAAATCCACGAGGTCCTCGCCACGAGGACCAAGATCTACCTGATCGTGGACTTCGCCGGCGGCGGCGAGCTCTTCTCGAAGCTCTCCCGGCGCGGCCGCCTCCCGGAGCCCCTCGCGCGGCGCTACTTCGCGCAGCTAGTCTCCGCGCTCCGCTTCTGCCACCGCCACGGCGTCGCGCACCGCGACCTCAAGCCGCAGAACCTCCTCCTCGACGCCGCCGGCGACCTCAAGGTCTCCGACTTCGGCCTCTCCGCGCTGCCGGAGCACCGCCACAACGGCCTCCTCCACACCGCCTGCGGAACTCCCGCCTACGCCGCGCCGGAGATCCTCCGCCGCGTCGGCTATGACGGCTCCACGGCCGACGCGTGGTCCTGCGGCGTCATCCTCTACGTCCTCCTCGCCGGCCAGCTCCCCTTCGACGACTCCAACATTCCGGCCATGTGCAAGCGCATCTCCCGCCGCGACTACCTGTTCCCGCCGTGGATCTCGAAATCCGCGAAAAACCTCATTTACCGATTACTCGACCCGAACCCTAAAACTCGAATTAAACTAGACAGCGTCTTCGACAACGCGTGGTTTAAGAACAAGAAGTCGGTGAGGGTGAGCGCGGAAGAGAGCGTTTTCGAGAGTGATTTGTATAACAAGTGTTGCGACGGTTATAAATTGGGGATGAACGCGTTTGATATAATATCGATGTCGTCGGGGTTGGATTTGAGGGGGTTGTTCGAAACGACGTCGGAGAAGGGGAGGAGGAGGGAGAAGCGGTTCACTTCGGATAAGAAGGTGGAGGCGGTGGAGGCGAAGGTGAAGGAGGTTGGGTTGCGTTTGGGGTTTAGGGTTGAGGTCGGGAAGAACGGGGCAATTGGATTGGGGAAGGAGAAGGTGGCTTTGGTGGTTGAGGTGTTTGAGATTGCGACTCACTTGTTGCTTGTGGCGGTCAAAGTGGTGGATGGTGGGGTGGAGTTTGAGGAGCTGCATTGGGATGATTGGAGAATTGGCCTTCAAGATGTTGTTCTCTCTTggcataataacaataataatgaccCAGCAACCCTTGCACAGTAG 1302 0.5998 MEQPPSSPPPRTILGKYQLTRFLGRGNFAKVYQARSLVDGGTVAVKAIDKSKTVDAAMEPRIVREIDAMRRLHHHPNILKIHEVLATRTKIYLIVDFAGGGELFSKLSRRGRLPEPLARRYFAQLVSALRFCHRHGVAHRDLKPQNLLLDAAGDLKVSDFGLSALPEHRHNGLLHTACGTPAYAAPEILRRVGYDGSTADAWSCGVILYVLLAGQLPFDDSNIPAMCKRISRRDYLFPPWISKSAKNLIYRLLDPNPKTRIKLDSVFDNAWFKNKKSVRVSAEESVFESDLYNKCCDGYKLGMNAFDIISMSSGLDLRGLFETTSEKGRRREKRFTSDKKVEAVEAKVKEVGLRLGFRVEVGKNGAIGLGKEKVALVVEVFEIATHLLLVAVKVVDGGVEFEELHWDDWRIGLQDVVLSWHNNNNNDPATLAQ 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3277 433 Pfam Protein kinase domain 17 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g3277 433 SMART serkin_6 17 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g3277 433 Pfam NAF domain 303 360 IPR004041 GO:0007165
Ssu7g3277 433 Gene3D Kinase associated domain 1, KA1 306 418 - -
Ssu7g3277 433 ProSiteProfiles Protein kinase domain profile. 17 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g3277 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Ssu7g3277 433 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Ssu7g3277 433 ProSiteProfiles NAF domain profile. 298 322 IPR018451 GO:0007165
Ssu7g3277 433 CDD CIPK_C 304 414 - -
Ssu7g3277 433 PANTHER SERINE/THREONINE KINASE 10 423 - -
Ssu7g3277 433 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 10 423 - -
Ssu7g3277 433 SUPERFAMILY Protein kinase-like (PK-like) 13 281 IPR011009 -
Ssu7g3277 433 Gene3D Transferase(Phosphotransferase) domain 1 10 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3277 Ssu-Chr7 78493360 78494661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3277 2 423 Miscellaneous Gene Families AT3G23000 56.410 9.33e-164 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu7g3277 Pkinase 2.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3277 K12761 - gmx:100305372 718.383