Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g3272 ATGGTTGGATTGGAACTCATACCCGTAGGTACAATTTTGGCTGTTCTAAGCAGCCAGGTCGTGAAAACAGCTAATGCAGCAATTGATGTTGTCATTGATAAAGAAAGTTTCAAGGTCCTTTCAAAACACCTGCTTGATATTGCACCAGTCCTAAAGGAATTGCAGCTTCAGGAATTGAACGAGTCTCAAGCTGCAAGGGTTGCTTTGGAGTCTCTTGAATCAGATGTCAAAAAGGCGAATAATTTGGTTGAGAAGTACAGGAACCGTGGCCGCTTTTACCTGCTGGTGAGGTGCAGATATATAGTCAAGGAGGTTGAACAGGTTACAAGGGATATTGGAAGGTCTCTGGCTGCACTGTCCATTGCAAACACTGAAGTCCTATCAAGAATTTCTGATCAGGTTAACAGACTACAGAATGAGATGCAAAATGTGGAGTTTGAGGCTTCACAATCTCAGCTTCAAATTGTTGACAAGTTGAACCATGGAATTAGGGAGCAGAAACTAGACCAGGCTTTTGCAAATGACATGCTTGAGGAAATAGCAAGGGCAGTTGGGGTGCCAGTGGAGCCTTCAGAGATAAGCAAAGAGCTAGCCAGCATTAGGCAGGAAAGGGAAGAAGCAGCCAACAGGAAAGAAAGGgctgaatttatttttttggagcAGATCATTGAGCTACTATCGCGAGCTGATGTTGCCAGGGACTATGAAGAAGTTAAGAAGCAATACTTTAAAAGGGTTCAGGTAATAGAGAGATATGATTCGAGGGAAAAATATATCCCACCACTTAATTCTTTCCTTTGTCACATAACTGGAGCTGTTATGGTAGATCCTGTCAGCCTTTGCACTGGTACTACCTGCGAGAGATCCGCCATTGAAGCTTGGTTTGGTGATGGCAACAGGACTGACCCTGAAACAAAAGAGGTTCTTGAAGACACTACCTTGAGATCGAATGTTCGATTAAGAGAATCCATAGAAGAGTGGAGAGAAGTTAATTACTGCTTTGTAATAAGGTCGATCAGGGAAAGCCTATTATCCAATTCTGACTTATTAGTGCAAGAATCCCTGAGCCAAATTCAGGTTCTCATAAGAGAGAATTCCATTAACAAGGATTGGATTTCTATAGGAGAGCTTACTGATATTATTATCTCTATCCTTGGGAACTCTGATTCCAGAGATGTGAAGATGAAGATCTTGATTACTTTGAAGGATGCTGTAGAGGGGCATGCAAGAAACAAGGAAAAAGTGGTTGAATCTCAAGGTTGGCATCACATTATTTCCTGCTTAGGGAGTGACTCTAGAATTTCGAAAGAAGCAATTGATTTGCTATATGAGTTGCTTCAAGATCGATCTGGTTGGAATAGAAGCTTCTGCAGAAAACTCTCTGAGCATCCCAGTGCAGTTTTTTACCTTGTTACTCTTCTAAAGGGTCCTGTCACTGATTCAGCTGGGGTTTCAGAAAGGATTTTGATGGAGCTTTCTGAAATAGATGAGGAAAACATTTCAGCTGCTGCAAAGCTTGGCTGGTACAAACCGCTTATTGATCGCATGATTCAAgGATCGGAAACTTCAAGAATGTCAATGGCAAAAGTCATAGTTAATTTGGAATTGAAAGATTTGAACTTGAAACTCCTTGGCGATCAGGGAGTTATACTTCCATTGCTAGAAATGCTATCTGGCAGCATCGGATCTAAAGAACTGTCATTGTCAGCCCTGGTTAAACTAGCAAGATTGCATGCCAATAAGGGGATTATTGCAACATCTGGAGGTGTGCCTCTTGTTGTAGATTTAATGTTCTCTCGCAGGATGCGGGCATTCATTACTATTAAATGTTGTGAAATCCTGGAGAAGCTTGCTTCAGATGATGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAACCAACTTGAGTTAGATAACATCATCACCAATTTGCTAGCTCTACAGCAGAGTCCTAACTCAGCTCACTACCGTAAGCCTGCATTACGTTCTCTTCTTGGCATTTGCAAGTTTGAGACTGGTTTAGTTAAGAAGGCAGTTCTGGCAGCCAATGGGGTATCTCTAATCCTCCCCCTTCTTGATGATTCTGACTCAGAAATCAGGGAAACTGCCATaaatcttctctttcttttctctcaacatGAACCAGAAGGAGTAGTTGAGTACCTCTTCAGGCCCAGAAGACTGGAAGCTTTAGTTGGGTTTCTTGAGAGTGATGACAATGATGATGTGCAAATGGCTGCTGCTGGTTTACTAGCTAACCTTCCAAAATCAGAAAGAGAACTCACCAAGAAGTTGATTGACTTGGGTGGCCTTGATGCAATCATAAGCATTTTGAAAAATGGTACAATGGAAGCAAAAGAAAATGCTCTCAGTGCACTCTTCAGGTTCACAGATCTCACAAATATTGAGTCACAGCGCGATTTGGTTAAACGAGGAATATATCCTTTGCTTGTAAATTTTCTCGACACCGGTTCAGTAACAGCAAAGGCAAGAGCAGCAGCATTCATTGGTGATCTCTCTATGAGCACTCCAAAGCTCACAGCTGTTTCCAAATCAACTGGTTGCACTGGTTGGTGTTGTTTTAGATCATCACAAGTTCCTTTGTGTTCAGCACATGGGAGTGCATGCAGTATGAGTTCCACATTTTGTCTTTTGGAAGCAAATGCTTTGCCTGGCTTGATAAAGCTGTTAGATGGGGAGGTTCATGCAACTGCTTATGAAGCTATACAGACTCTTTCCACATTGGTTTTGGAAGACTTTCCCCAAAGGGGAGCTCGTGTGTTGCATGAGTCAGATGCAATGAGACCCCTATTGGAAATTTTAAATTGGGGAACTGATTCTCTCAAGGCAGAAGCTCTAGGACTGTTGGAGAAGGTGTTTGTCTCAAAGGAAATGGTTGAATACTATGGAACAACAGCTAGGTTACGTCTAGTTGGTCTGACTGGCATGAATGTATATGGGGATGGCCACCTGAGGAGAAAGGCTGCCAGGGTACTGTCATTGGTTGAACGCTATTCAAAGTCATCATCATCTGCAATCTCTGGAGTTCTGGAGTGA 3057 0.4174 MVGLELIPVGTILAVLSSQVVKTANAAIDVVIDKESFKVLSKHLLDIAPVLKELQLQELNESQAARVALESLESDVKKANNLVEKYRNRGRFYLLVRCRYIVKEVEQVTRDIGRSLAALSIANTEVLSRISDQVNRLQNEMQNVEFEASQSQLQIVDKLNHGIREQKLDQAFANDMLEEIARAVGVPVEPSEISKELASIRQEREEAANRKERAEFIFLEQIIELLSRADVARDYEEVKKQYFKRVQVIERYDSREKYIPPLNSFLCHITGAVMVDPVSLCTGTTCERSAIEAWFGDGNRTDPETKEVLEDTTLRSNVRLRESIEEWREVNYCFVIRSIRESLLSNSDLLVQESLSQIQVLIRENSINKDWISIGELTDIIISILGNSDSRDVKMKILITLKDAVEGHARNKEKVVESQGWHHIISCLGSDSRISKEAIDLLYELLQDRSGWNRSFCRKLSEHPSAVFYLVTLLKGPVTDSAGVSERILMELSEIDEENISAAAKLGWYKPLIDRMIQGSETSRMSMAKVIVNLELKDLNLKLLGDQGVILPLLEMLSGSIGSKELSLSALVKLARLHANKGIIATSGGVPLVVDLMFSRRMRAFITIKCCEILEKLASDDDGIDFFVDGEGNQLELDNIITNLLALQQSPNSAHYRKPALRSLLGICKFETGLVKKAVLAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFRPRRLEALVGFLESDDNDDVQMAAAGLLANLPKSERELTKKLIDLGGLDAIISILKNGTMEAKENALSALFRFTDLTNIESQRDLVKRGIYPLLVNFLDTGSVTAKARAAAFIGDLSMSTPKLTAVSKSTGCTGWCCFRSSQVPLCSAHGSACSMSSTFCLLEANALPGLIKLLDGEVHATAYEAIQTLSTLVLEDFPQRGARVLHESDAMRPLLEILNWGTDSLKAEALGLLEKVFVSKEMVEYYGTTARLRLVGLTGMNVYGDGHLRRKAARVLSLVERYSKSSSSAISGVLE 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g3272 1018 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 333 IPR013083 -
Ssu7g3272 1018 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Ssu7g3272 1018 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1015 - -
Ssu7g3272 1018 Gene3D - 862 1013 IPR011989 -
Ssu7g3272 1018 Gene3D - 9 123 IPR036537 GO:0007166
Ssu7g3272 1018 SUPERFAMILY ARM repeat 637 1001 IPR016024 -
Ssu7g3272 1018 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Ssu7g3272 1018 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Ssu7g3272 1018 Coils Coil 127 154 - -
Ssu7g3272 1018 Coils Coil 62 89 - -
Ssu7g3272 1018 SUPERFAMILY RING/U-box 247 331 - -
Ssu7g3272 1018 SUPERFAMILY ARM repeat 338 713 IPR016024 -
Ssu7g3272 1018 SMART arm_5 672 712 IPR000225 GO:0005515
Ssu7g3272 1018 SMART arm_5 408 447 IPR000225 GO:0005515
Ssu7g3272 1018 SMART arm_5 714 756 IPR000225 GO:0005515
Ssu7g3272 1018 SMART arm_5 577 619 IPR000225 GO:0005515
Ssu7g3272 1018 SMART arm_5 801 841 IPR000225 GO:0005515
Ssu7g3272 1018 SMART arm_5 877 917 IPR000225 GO:0005515
Ssu7g3272 1018 SMART arm_5 537 576 IPR000225 GO:0005515
Ssu7g3272 1018 SMART arm_5 921 961 IPR000225 GO:0005515
Ssu7g3272 1018 SMART arm_5 758 798 IPR000225 GO:0005515
Ssu7g3272 1018 Gene3D - 487 855 IPR011989 -
Ssu7g3272 1018 Coils Coil 197 217 - -
Ssu7g3272 1018 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1015 - -
Ssu7g3272 1018 Gene3D - 335 475 IPR011989 -
Ssu7g3272 1018 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 726 754 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g3272 Ssu-Chr7 78452387 78456426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g3272 264 975 U-box Gene Family AT1G20780 27.513 1.01e-41 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g3272 - - gsj:114377374 1775.37